Locus 6626

Sequence ID 2R_DroMel_CAF1
Location 20,718,014 – 20,718,134
Length 120
Max. P 0.887640
window10553

overview

Window 3

Location 20,718,014 – 20,718,134
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 92.58
Mean single sequence MFE -26.90
Consensus MFE -23.32
Energy contribution -23.20
Covariance contribution -0.12
Combinations/Pair 1.25
Mean z-score -1.51
Structure conservation index 0.87
SVM decision value 0.95
SVM RNA-class probability 0.887640
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20718014 120 + 20766785
CACAUCCCUUCAAUUAGACGCGCCACACUAAUCAUUAAAGAAAGUGGUUAGUCUGCUAGCAGGAAAAUGAAAGUAAGCAAAAGGACUCAGUCUAAAGAGGUCUGUAAAACCUUGCUUAGA
.(((..((((...((((((...((..((((((((((......)))))))))).((((.((............)).))))...)).....)))))).))))..)))............... ( -27.30)
>DroSec_CAF1 151675 119 + 1
CGCAUGCCUUCAAUUAGAUGCGCCACACUAAUCAUUAAAGAAAGUGGUUAGUCUGCUAGCAGGAAAAUGAAAGUAAGCAA-AGGACUCAGUCUAAAGAGGUCUGUAAAACCUUGCUUAGA
.((.(((.((((......(((..((.((((((((((......)))))))))).))...)))......)))).))).))..-.........(((((.(((((.......)))))..))))) ( -29.90)
>DroSim_CAF1 156740 120 + 1
CGCAUGCCUUCAAUUAGAUGCGCCACACUAAUCAUUAAAGAAAGUGGUUAGUCUGCUAGCAGGAAAAUGAAAGUAAGCAAAAGGACUCAGUCUAAAGAGGUCUGUAAAACCUUGCUUAGA
.((.(((.((((......(((..((.((((((((((......)))))))))).))...)))......)))).))).))............(((((.(((((.......)))))..))))) ( -29.90)
>DroEre_CAF1 192497 118 + 1
CACAUAUCUUGAAUUAGAAACGCCACACUAAUCAUUAAAGAAAGUGGUUAGUUUGCAAGAAGGAAAAUGAAAGUAAGCGAAAGGACUCAGUCUAAAGAGGUCUGUAAAACCUUGGUUA--
.(((.(((((...(((((...((...((((((((((......))))))))))..))...............(((...(....).)))...))))).))))).)))..(((....))).-- ( -22.40)
>DroYak_CAF1 157868 120 + 1
CACAUGCUUCGAAUUAGAUGCGCCACACUAAUCAUAAAAGAAAGUGGUUAGUUUGCAAGUAGGAAAAUGAAAGUAAGCGAAAGGACUCAGUCUAAAGAGGUCUGUAAAACCUUGGUUAGA
.(((.(((((...((((((..((...(((((((((........)))))))))..))...............(((...(....).)))..)))))).))))).)))..(((....)))... ( -25.00)
>consensus
CACAUGCCUUCAAUUAGAUGCGCCACACUAAUCAUUAAAGAAAGUGGUUAGUCUGCUAGCAGGAAAAUGAAAGUAAGCAAAAGGACUCAGUCUAAAGAGGUCUGUAAAACCUUGCUUAGA
.(((.(((((...((((((...((..((((((((((......)))))))))).((((.((............)).))))...)).....)))))).))))).)))............... (-23.32 = -23.20 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:33 2006