Locus 6624

Sequence ID 2R_DroMel_CAF1
Location 20,713,747 – 20,713,862
Length 115
Max. P 0.904338
window10548

overview

Window 8

Location 20,713,747 – 20,713,862
Length 115
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 91.95
Mean single sequence MFE -27.68
Consensus MFE -23.90
Energy contribution -23.78
Covariance contribution -0.12
Combinations/Pair 1.06
Mean z-score -1.56
Structure conservation index 0.86
SVM decision value 1.04
SVM RNA-class probability 0.904338
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20713747 115 - 20766785
UCUGUGUAACGUUUAUAUACAGA----CAUUCAUAUAUAUAUAAAGCGUGCGUUGAAUAACCG-GAAAUAUGAGACAUCAAGGCUUUUAUAAAUGGAGGCCGUAUAUGCUUUUUGUUGAU
((((((((.......))))))))----...........(((.((((((((.(((..(((....-....)))..))).....((((((((....))))))))...)))))))).))).... ( -25.10)
>DroSec_CAF1 147337 119 - 1
UCUGUGUAACGUUUAUAUACAGAUGUAUAUACAUGCAUAUAUAGAGCGUGCGUGGAAUAACCGGGAAAUAUGAGACAUCAAGGCUUUUAUAAAUGGA-GCCGUAUAUGCUUUUUGUUGAU
((((((((.(((.(((((((....))))))).)))..))))))))((((((.(((.....))).).....(((....))).((((((.......)))-)))...)))))........... ( -28.00)
>DroSim_CAF1 152406 119 - 1
UCUGUGUAACGUUUAUAUACAGAUGUACAUACAUGCAUAUAUAGAGCGUGCGUUGAAUAACCG-GAAAUAUGAGACAUCAAGGCUUUUAUAAAUGGAGGCCGUAUAUGCUUUUUGUUGAU
((((((((.......))))))))....((.(((.((((((((.........(((..(((....-....)))..))).....((((((((....))))))))))))))))....))))).. ( -27.80)
>DroEre_CAF1 188477 111 - 1
UCUGUGUAACGUUUAUAUACAGAUGU--------ACAUAUAUAGAGCGUGUGUUGAAUAACCG-GAAAUAUGAGACAUCAAGGCUUUUAUAAAUGGAGGCCGUAUAUGCUUUUUGUUGAU
((((((((.......))))))))...--------.((.(((.((((((((((((..(((....-....)))..))).....((((((((....))))))))..))))))))).))))).. ( -27.50)
>DroYak_CAF1 153388 119 - 1
UCUGUGUAACAUUUAUAUACAGAUGUAUGUACAUACAUAUACAGAGCGUGUGUUGAAUAACCG-GAAAUAUGAGACAUCAAGGCUUUUAUAAAUGGAGGCCGUAUAUGCUUUUUGUUGAU
((((((((.......))))))))(((((((....))))))).((((((((((((..(((....-....)))..))).....((((((((....))))))))..)))))))))........ ( -30.00)
>consensus
UCUGUGUAACGUUUAUAUACAGAUGUACAUACAUACAUAUAUAGAGCGUGCGUUGAAUAACCG_GAAAUAUGAGACAUCAAGGCUUUUAUAAAUGGAGGCCGUAUAUGCUUUUUGUUGAU
((((((((.......))))))))............((.(((.((((((((....................(((....))).((((((((....))))))))...)))))))).))))).. (-23.90 = -23.78 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:28 2006