Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,295,057 – 3,295,151 |
Length | 94 |
Max. P | 0.519576 |
Location | 3,295,057 – 3,295,151 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 88.78 |
Mean single sequence MFE | -24.94 |
Consensus MFE | -18.04 |
Energy contribution | -19.12 |
Covariance contribution | 1.08 |
Combinations/Pair | 1.10 |
Mean z-score | -1.63 |
Structure conservation index | 0.72 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.519576 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3295057 94 - 20766785 GCUCUAAAAGCUUUUCUUCGCCGAAGGUAGAAAGACAUGGAUGGUUUCGAGUAUUUAAAGAGGGGGAGCUUAGUAUGGUCAGAGAGCG--AGAGAG (((((..((((((..(((((((...)))..(((.((.((((....)))).)).)))...))))..)))))).(......)..))))).--...... ( -24.00) >DroSec_CAF1 63365 96 - 1 GCUCUAAAAGCUUUUCUGCGCCGAAGGUAGAAAGACAUGGAUGGUUUCGAAUGUUUGAAGAGGGGGAGCUUAGUGUGGUCAGAGAGCAAGAGAGAG (((((..((((((..((.(..((((.((.((((..((....)).))))..)).))))..).))..))))))..((....)).)))))......... ( -23.30) >DroSim_CAF1 75104 96 - 1 GCUCUAAAAGCUUUUCUUCGCCGAAGGUAGAAAGACAUGGAUGGUUUCGAAUGUUUGAAGAGGGGGAGCUUAGUGUGGUCAGAGAGCAAGAGAGAG (((((..((((((..((((..((((.((.((((..((....)).))))..)).))))..))))..))))))..((....)).)))))......... ( -27.40) >DroEre_CAF1 62218 93 - 1 GCUCUAAAAGCUUCUCUUCGCCGAAGGUAGAAAGACAUGGUUGUUUCCGUACGUGUGAAGAGGG-GAGCUUAGUAUAGUCAGAAAGCG--AGAGAG .((((.....(((((((((((((..((.....(((((....)))))))...)).))))))))))-).((((............)))).--)))).. ( -26.40) >DroYak_CAF1 62370 94 - 1 GCUCUAAAAGCUUUUCUUCACCGAAGGUAGAAAGACAUUGAUGGUUCCGAACGUUUGAAGAGGGAGAGCUUAGUGUGGUCGAAGAACG--AGAGAG .((((..((((((((((((..((((.((.(((...((....)).)))...)).))))..)))))))))))).......(((.....))--).)))) ( -23.60) >consensus GCUCUAAAAGCUUUUCUUCGCCGAAGGUAGAAAGACAUGGAUGGUUUCGAAUGUUUGAAGAGGGGGAGCUUAGUGUGGUCAGAGAGCG__AGAGAG (((((..((((((((((((..((((.((.((((..((....)).))))..)).))))..)))))))))))).(......)..)))))......... (-18.04 = -19.12 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:02 2006