Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 20,709,826 – 20,709,940 |
Length | 114 |
Max. P | 0.554240 |
Location | 20,709,826 – 20,709,940 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 85.35 |
Mean single sequence MFE | -22.70 |
Consensus MFE | -16.52 |
Energy contribution | -18.04 |
Covariance contribution | 1.52 |
Combinations/Pair | 1.11 |
Mean z-score | -1.61 |
Structure conservation index | 0.73 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.554240 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 20709826 114 - 20766785 CGCGUGAACUCAUGCAAAAAUGUAUUUU-----UUAAGACUGUAAUUAAA-AUCACAAACCAGCAAUAAUGGCACAGCAAGCCAAAGUUUGCUAUGCAAAUGACAGGACAAUGAAAACUG .(((((....)))))..........(((-----(((...((((.(((...-.........((.......))(((.(((((((....))))))).))).))).)))).....))))))... ( -23.10) >DroSec_CAF1 143346 114 - 1 CGCGUGAACUCAUGCAAAAAUGUAUUUU-----UUAAGACUGUAAUUAAA-AUCAAAAACCAGCAAUAAUGGAAAAGCAAGACAAAGUUUGCUGUGCAAAUGACAGGACAAUGAAAACUG .(((((....)))))..........(((-----(((...((((.(((...-........(((.......)))...((((((......)))))).....))).)))).....))))))... ( -18.40) >DroSim_CAF1 148339 114 - 1 CGCGUGAACUCAUGCAAAAAUGUAUUUU-----UUAAGACUGUAAUUAAA-AUCAAAAACCAGCAAUAAUGGACCAGCAAGACAAAGUUUGCUGUGCAAAUGACAGGACAAUGAAAACUG .(((((....)))))..........(((-----(((...((((.(((...-........(((.......)))..(((((((......)))))))....))).)))).....))))))... ( -20.90) >DroEre_CAF1 184380 120 - 1 CGGGUGAACUCAUGCAAAAAUAUCUUUUUUUUUUCAAGACUAUAAUUAAAUAACAAAAAGCAGUGAUGGUGGCGCAGCAAACCCAAGUUUGCUGUGCAAAUGACAGGACAAUGGAAACUG .(((....))).((.(((((........))))).))..........................((.((....(((((((((((....)))))))))))..)).))........(....).. ( -25.60) >DroYak_CAF1 149229 104 - 1 CGGGUGAACUCAUGCAAAAAU----------------GACUAUAAUUAAAAAACAAAAACCCGCGAUGAUGGCACAGCAAGCCCAAGUUUGCUGUGCAAAUGACAGGACAAUGAAAACUG (((((....((((......))----------------))...................)))))........(((((((((((....)))))))))))......(((...........))) ( -25.50) >consensus CGCGUGAACUCAUGCAAAAAUGUAUUUU_____UUAAGACUGUAAUUAAA_AUCAAAAACCAGCAAUAAUGGCACAGCAAGCCAAAGUUUGCUGUGCAAAUGACAGGACAAUGAAAACUG .(((((....)))))........................................................(((((((((((....)))))))))))......(((...........))) (-16.52 = -18.04 + 1.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:20 2006