Locus 6617

Sequence ID 2R_DroMel_CAF1
Location 20,706,621 – 20,706,717
Length 96
Max. P 0.695911
window10531

overview

Window 1

Location 20,706,621 – 20,706,717
Length 96
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 71.20
Mean single sequence MFE -22.11
Consensus MFE -2.60
Energy contribution -3.32
Covariance contribution 0.72
Combinations/Pair 1.15
Mean z-score -1.71
Structure conservation index 0.12
SVM decision value 0.34
SVM RNA-class probability 0.695911
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20706621 96 - 20766785
AACAUUUUUCCAAAUUAUUACU--AUAAAAAUCUUAAUGCAGACCAUG------UGGACACGUG---GAUG-------------CAUCAAAAAUGUAUUCCUUUAUCAUUUCCUAGGGGA
.((((((((.....((((....--))))........(((((..(((((------(....)))))---).))-------------))).))))))))..(((((((........))))))) ( -21.30)
>DroSec_CAF1 140192 95 - 1
AACAUGUUUGCAUGUUAUUACU--A-AAAAAUCUUAAUGCAGACCAUG------UGGACAUGUG---GAUG-------------CACCAAAAAUGUGUUUCUUUAUCAUUUCCAAGGGGA
.((((((((((((.........--.-..........))))))).))))------)(((.(((.(---((.(-------------(((.......)))).)))....))).)))....... ( -21.95)
>DroSim_CAF1 144416 95 - 1
GACAUUUUUGCAUAUUAUUACU--A-AAAAAUCUUAAUGCAGACCAUG------UGGACAUGUG---GAUG-------------CACCAAAAAUGUGUUUCUUUAUCAUUUCCAAGGGGA
......(((((((.........--.-..........)))))))((...------((((.(((.(---((.(-------------(((.......)))).)))....))).))))...)). ( -19.65)
>DroEre_CAF1 181058 117 - 1
AAAAUUGUUGCAAAUGACUUCGUUAUAAAAAUCGAAAUACAGCCCAUAAACUUUAUGACAUGCG---GAUGCACUCUCCACAUGAACCAAAUAUUUUUUCCUGUACCAUUUCCAAGGGGA
....((.(((.(((((..((((..........)))).(((((..((((.....)))).((((.(---((.......))).))))................))))).))))).))).)).. ( -18.40)
>DroYak_CAF1 146211 120 - 1
AAAUUUGUUGCUAAUGAUUUUUUAAAAAAAAUCUUAACGCAGCCCCUAAACUUUUGGAUAUGCGGAGGAUGCACUCCUCACGUGCACCAAAAUUUUAUUCCUGUACCAUUUCCAAGGGGA
......(((((....(((((((....))))))).....))))).......((((((((.(((..(((((.....)))))..(((((...............)))))))).)))))))).. ( -29.26)
>consensus
AACAUUUUUGCAAAUUAUUACU__A_AAAAAUCUUAAUGCAGACCAUG______UGGACAUGUG___GAUG_____________CACCAAAAAUGUAUUCCUUUAUCAUUUCCAAGGGGA
..............................(((....((((..(((........)))...))))...)))........................................(((....))) ( -2.60 =  -3.32 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:13 2006