Locus 6615

Sequence ID 2R_DroMel_CAF1
Location 20,706,242 – 20,706,361
Length 119
Max. P 0.830947
window10529

overview

Window 9

Location 20,706,242 – 20,706,361
Length 119
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 97.99
Mean single sequence MFE -31.64
Consensus MFE -29.68
Energy contribution -29.76
Covariance contribution 0.08
Combinations/Pair 1.03
Mean z-score -1.39
Structure conservation index 0.94
SVM decision value 0.71
SVM RNA-class probability 0.830947
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20706242 119 + 20766785
AAACAGCUGCCAUGCGACUGGCACAUUCCACACUGUGGGGCGGAGAC-UUUUUAAAGUGUUCAUUAGUCGCACGUUUACAUAUCCAAAUUGUCAACAUGCCAAGGCGAUGGAAAAAACAU
...((..((((.(((((((((....((((((...)))))).(((.((-((....)))).))).))))))))).(((.(((.........))).))).......)))).)).......... ( -31.00)
>DroSec_CAF1 139805 119 + 1
AAACAGCUGCCAUGCGACUGGCACAUUCCACACUGUGGGGCGGAGAC-UUUUUAAAGUGUUCAUUAGUCGCACGUUUACAUAUCCAAAUUGUCAACAUGCCAAGGCGAUGGAAAAAACAU
...((..((((.(((((((((....((((((...)))))).(((.((-((....)))).))).))))))))).(((.(((.........))).))).......)))).)).......... ( -31.00)
>DroSim_CAF1 144029 119 + 1
AAACAGCUGCCAUGCGACUGGCACAUACCACACUGUGGGGCGGAGAC-UUUUUAAAGUGUUCAUUAGUCGCACGUUUACAUAUCCAAAUUGUCAACAUGCCAAGGCGAUGGAAAAAACAU
...((..((((.((((((((((.....((((...)))).))(((.((-((....)))).)))..)))))))).(((.(((.........))).))).......)))).)).......... ( -31.70)
>DroEre_CAF1 180658 120 + 1
AAACAGCUGCCAUGCGACUGGCACAUUCCACACUGUGGAGCGGGGACAUUUUUAAAGUGUUCAUUAGUCGCACGUUUACAUAUCCAAAUUGUUAACAUGCCAAGGCGAUGGAAAAAACAU
...((..((((.(((((((((..(.((((((...)))))).).(((((((.....))))))).))))))))).(((.(((.........))).))).......)))).)).......... ( -32.70)
>DroYak_CAF1 145815 120 + 1
AAACAGCUGCCAUGCGACUGGCACAUUCCACACUGUGGGGCGGGGACAUUUUUAAAGUGUUCAUUAGUCGCACGUUUACAUAUCCAAAUUGUCAACAUGCCAAGGCGAUGGAAAAAACAU
...((..((((.(((((((((..(.((((((...)))))).).(((((((.....))))))).))))))))).(((.(((.........))).))).......)))).)).......... ( -31.80)
>consensus
AAACAGCUGCCAUGCGACUGGCACAUUCCACACUGUGGGGCGGAGAC_UUUUUAAAGUGUUCAUUAGUCGCACGUUUACAUAUCCAAAUUGUCAACAUGCCAAGGCGAUGGAAAAAACAU
...((..((((.((((((((((((.((((((...)))))).(....).........))))....)))))))).(((.(((.........))).))).......)))).)).......... (-29.68 = -29.76 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:11 2006