| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 20,698,832 – 20,698,931 |
| Length | 99 |
| Max. P | 0.745080 |
| Location | 20,698,832 – 20,698,931 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 75.88 |
| Mean single sequence MFE | -17.19 |
| Consensus MFE | -7.07 |
| Energy contribution | -9.23 |
| Covariance contribution | 2.16 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.41 |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.745080 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 20698832 99 + 20766785 -------------UUUUACCUUAAGGAUAGCUUAUAAAUUGGCUGUU------ACU--ACAUAGAAAUAAAUGGCAGUGGAUACAAUGCUAUCCCAAAAUAACAAAAACAAGCUUACAAG -------------...........(((((((......(((.((((((------(..--...((....))..))))))).))).....))))))).......................... ( -18.70) >DroSec_CAF1 132508 99 + 1 -------------UUUUACCUUAAGGAUAGCUUAUAAAUUGGCAGUU------ACU--ACAUAGAAAUAAAUGGCAGUGCAUAUAAUGCUAUCCCAAAAUAACAAAAACAAGCUUACAAG -------------...........((((((((((((.((((.((((.------...--)).((....))..)).))))...))))).))))))).......................... ( -17.50) >DroSim_CAF1 135047 99 + 1 -------------UUUUACCUUAAGGAUAGCUUAUAAAUUGGCAGUU------ACU--ACAUAGAAAUAAAUGGCAGUGGAUAUAAUGCUAUCCCAAAAUAACAAAAACAAGCUUACAAG -------------...........((((((((((((.((((.((((.------...--)).((....))..)).))))...))))).))))))).......................... ( -17.50) >DroEre_CAF1 172383 118 + 1 UACCCAUUCCAAUUGUUACCUUUU-UAAAGCUAAUAAACUGGCAGUUUAUAUUUCUACACAAAGAAAUAACUGGCAGUGGAUAAAACGCCACCCCAAAA-AACAAAAACAAGUUUACAAG .......(((..((((((.(((..-..))).))))))((((.((((...(((((((......))))))))))).))))))).................(-(((........))))..... ( -21.20) >DroYak_CAF1 137042 88 + 1 UAC--------------------U-ACAAGCUAAUAAACUGGCU---------ACU--ACAAAAGAAUAACUGGCAGUGGAUAUAACGCCAUCCCAAAAGAAGAAAAACAAGCUUACAAG ...--------------------.-..(((((.....((((.(.---------...--..............).))))((((........))))................)))))..... ( -11.07) >consensus _____________UUUUACCUUAAGGAUAGCUUAUAAAUUGGCAGUU______ACU__ACAUAGAAAUAAAUGGCAGUGGAUAUAAUGCUAUCCCAAAAUAACAAAAACAAGCUUACAAG ........................(((((((.(((..((((.(.............................).))))..)))....))))))).......................... ( -7.07 = -9.23 + 2.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:53 2006