Locus 6605

Sequence ID 2R_DroMel_CAF1
Location 20,690,604 – 20,690,704
Length 100
Max. P 0.813790
window10508

overview

Window 8

Location 20,690,604 – 20,690,704
Length 100
Sequences 5
Columns 113
Reading direction forward
Mean pairwise identity 73.15
Mean single sequence MFE -19.48
Consensus MFE -1.40
Energy contribution -1.76
Covariance contribution 0.36
Combinations/Pair 1.36
Mean z-score -1.68
Structure conservation index 0.07
SVM decision value 0.66
SVM RNA-class probability 0.813790
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20690604 100 + 20766785
CUUACUAUG---GACUGAAACCAAUAUACA--CACAGCAAGGGUAUAAACAUACUAUGAAAAAUAGUAU----GUAAUUGUGGUGUAAACAGAAAUGUAUAGUAA----GCCU
((((((((.---............(((((.--((((((....))....(((((((((.....)))))))----))...))))))))).(((....))))))))))----)... ( -26.30)
>DroSec_CAF1 123598 104 + 1
CUUACUUUG---GACUGGAGCCAAUAUACC--CACAUCAAGGGUAAAAAAAUAUUUUCAAAAUUAUUAU----GUGAUUGUGGUGUAAAUACAAAUGUAUAGUAAACGAGCCU
........(---(.((.(........((((--(.......))))).................(((((((----..(.(((((.......))))).)..))))))).).)))). ( -17.50)
>DroSim_CAF1 126438 104 + 1
CUUACUUUG---GACUGGAACCAAUAUACC--CACAACAAGGGUAUAAAAAUAUUUUCAAAAUUAUUAU----GUGAUUGUGGUGUAAAUACAAAUGUAUAGUAAACGAGCCU
........(---(.((.(......((((((--(.......)))))))...............(((((((----..(.(((((.......))))).)..))))))).).)))). ( -19.90)
>DroEre_CAF1 164928 98 + 1
-----UUUA---AAUUGAAAUCAUUAUACA--CUCUGUAAGGGUAUA-----ACUUUCAUAAAUAUUAUGUAUGUAAUUGUGGUGUAAAUACAAAUGCAAAGUAACCGCGCCA
-----....---...(((((...((((((.--((......)))))))-----).))))).....................((((((...(((.........)))...)))))) ( -12.40)
>DroYak_CAF1 128763 102 + 1
-----UUUGCGUGAAUGAAAUCAAUCAAAACUCUUUGCAAGGGUAUAAAAAAACUGUCAUAAAUAUUAU----GUAAUUGUGGUGUAAAUACAAUUGCAAAGUAA--GCAAAA
-----(((((((((.(((......)))..(((((.....)))))............))))...((((.(----(((((((((.......)))))))))).)))).--))))). ( -21.30)
>consensus
CUUACUUUG___GACUGAAACCAAUAUACA__CACAGCAAGGGUAUAAAAAUACUUUCAAAAAUAUUAU____GUAAUUGUGGUGUAAAUACAAAUGUAUAGUAA_CGAGCCU
....................................(((((((((......))))))....................(((((.......))))).)))............... ( -1.40 =  -1.76 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:50 2006