| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 20,683,429 – 20,683,527 |
| Length | 98 |
| Max. P | 0.947844 |
| Location | 20,683,429 – 20,683,527 |
|---|---|
| Length | 98 |
| Sequences | 3 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 74.36 |
| Mean single sequence MFE | -29.33 |
| Consensus MFE | -17.49 |
| Energy contribution | -17.27 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.60 |
| SVM decision value | 1.38 |
| SVM RNA-class probability | 0.947844 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 20683429 98 + 20766785 CACUAUUUGGAACUACCGAACCGUCUAAAUGACCAGGAAGGAUACCACCAGGGAAAGGUCUUCCUGGACGGUUCGGCCGAGGACCACCUAGUAUCCAU .((((..(((..((.((((((((((.....))(((((((((...((....))......))))))))).))))))))...))..)))..))))...... ( -38.10) >DroSec_CAF1 116758 77 + 1 CACUACUUGGACCUUCCGAACCGUCUU---G---------------GCCAGGGAUAGGUCUUCCUGGAAGGUUAAGCCGAGGUAGG---UGUAUCCAU ((((.((((((((((((((......))---)---------------)(((((((......))))))))))))....)))))...))---))....... ( -24.00) >DroSim_CAF1 118184 77 + 1 CACUACUUGGACCUUCCGAACCGUCUU---G---------------GCCAGGGAUAGGUCUUCCUGGAAGGUUAGGCCGAGGUAGG---UGUAUCCAU ((((.(((((.(((.((...((.....---)---------------)(((((((......)))))))..))..))))))))...))---))....... ( -25.90) >consensus CACUACUUGGACCUUCCGAACCGUCUU___G_______________GCCAGGGAUAGGUCUUCCUGGAAGGUUAGGCCGAGGUAGG___UGUAUCCAU .....(((((.....((((....))......................(((((((......)))))))..)).....)))))................. (-17.49 = -17.27 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:46 2006