| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 20,677,842 – 20,677,941 |
| Length | 99 |
| Max. P | 0.845695 |
| Location | 20,677,842 – 20,677,941 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 78.07 |
| Mean single sequence MFE | -25.45 |
| Consensus MFE | -12.17 |
| Energy contribution | -13.54 |
| Covariance contribution | 1.36 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.34 |
| Structure conservation index | 0.48 |
| SVM decision value | 0.77 |
| SVM RNA-class probability | 0.845695 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 20677842 99 - 20766785 -------AGCUUUUGAAUGCAUUACCCCAUUCCAUAUUCGCAUACGCUGUGAAAAUACGCUUUUAU-UGC----A--CACCACUUAACUGAAGCUCGACUGGCAUUCAGAGCA -------.(((((.((((((................((((((.....)))))).....(((((..(-((.----.--.......)))..))))).......))))))))))). ( -22.40) >DroPse_CAF1 113526 99 - 1 AGUGUUCAGCAUGUG-AUGCAUUGCCCCUGCCCCUGCC--CCUGCCCCUUG----CGGGCUUUUAU-UGC----U--CAGCACUCGACUAAAGGCUGACUCGCAUUCAAAGCA ..((((..(.(((((-(.(((..((((..((....((.--...)).....)----)))))......-)))----(--((((.((.......))))))).)))))).)..)))) ( -22.70) >DroSec_CAF1 111184 104 - 1 -------AGCUUUUGAAUGCAUAACCCCAUUCCAUAUUCUCAUAUGCUGUGAAAAAACGAAGUGGUGUGCAAUAA--CACCACUUGACUGAAGCUCGACUGGCAUUCAGAGCA -------.(((((.((((((.......(((..(((((....)))))..)))........(((((((((......)--))))))))................))))))))))). ( -32.30) >DroSim_CAF1 112560 99 - 1 -------AGCUUUUGAAUGCAUAACCCCAUUCCAUAUUCUCAUAUGCUGUGAAAAAACGCUUUUAU-UGC----A--CACCACUUGACUGAAGCUCGACUGGCAUUCAGAGCA -------.(((((.((((((.......(((..(((((....)))))..))).......(((((...-..(----(--.......))...))))).......))))))))))). ( -22.00) >DroEre_CAF1 151580 101 - 1 -------AAGUUCUGAAUGCAAUACCCCAUACCAUAUUCUCAUGUGCUGUGAAAAUACGCUUUUAU-UGC----ACACACCACUUGACUGAAGCUCGACUGGCAUUCAGAGCA -------..(((((((((((......................(((((.((((((......))))))-.))----)))...((.(((((....).)))).))))))))))))). ( -29.80) >DroYak_CAF1 116169 97 - 1 ---------CUUCUGAAUGCAUUACCCCAUACCAUAUUCUCAUGUGCUGUGAAAAAACGCUUUUAU-UGU----A--CACCACUUGACUGAAGCUCGACUGGCAUUCAGAGCA ---------.((((((((((......................(((((.((((((......))))))-.))----)--)).((.(((((....).)))).)))))))))))).. ( -23.50) >consensus _______AGCUUUUGAAUGCAUUACCCCAUUCCAUAUUCUCAUAUGCUGUGAAAAAACGCUUUUAU_UGC____A__CACCACUUGACUGAAGCUCGACUGGCAUUCAGAGCA ........((.(((((((((.......(((..(((((....)))))..))).......(((((..........................))))).......))))))))))). (-12.17 = -13.54 + 1.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:45 2006