| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 20,673,333 – 20,673,424 |
| Length | 91 |
| Max. P | 0.921430 |
| Location | 20,673,333 – 20,673,424 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 73.60 |
| Mean single sequence MFE | -20.88 |
| Consensus MFE | -9.48 |
| Energy contribution | -10.43 |
| Covariance contribution | 0.95 |
| Combinations/Pair | 1.26 |
| Mean z-score | -2.14 |
| Structure conservation index | 0.45 |
| SVM decision value | 1.14 |
| SVM RNA-class probability | 0.921430 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 20673333 91 + 20766785 GCGCUAAUUGCGAAUUAAAGCCCAGCGUUUUGA-ACG---AAUCAAAUUGCAUGAGUUUUAAAUCGAAUUUCAGAAUU-UGUGCAAUCCGUGCACC ((((..(((((((.(((((((.(((((.(((((-...---..))))).))).)).))))))).))(((((....))))-)..)))))..))))... ( -25.60) >DroPse_CAF1 107817 81 + 1 GCACUAAUUGCAUAUUAAAGCUCAGCAUUUUGA-G-G---CAACAAAUUGCAUGAGUAGCAAAUUGAAUUGCACACCC----------CCACCACC (((.....)))........((((((((.((((.-.-.---...)))).))).))))).((((......))))......----------........ ( -16.80) >DroEre_CAF1 146423 84 + 1 GCGCUAAUUGCGAAUUAAAGCUCAGCAUUUUGA-ACG---AAACGAAUUGCAUGAGCUUUAAAUCGAAUUCCAGAAUC-UGUGCAAUC-------C ((((..(((.(((.(((((((((((((.((((.-...---...)))).))).)))))))))).)))........))).-.))))....-------. ( -25.90) >DroWil_CAF1 182026 87 + 1 GCACUAAUUGCGUAUUAAAGCUCAGCAUUUUCAGAGG---CAACAAAUUGCAAGAGUCUCAAAUUGAAUUACUGAGUCCUAAGCAACCCC------ (((.....)))((.(((..((((((....((((((((---(..............)))))....))))...))))))..)))))......------ ( -16.04) >DroYak_CAF1 111066 91 + 1 GCGCUAAUUGCGAAUUAAAGCUCAGCAUUUUGA-ACG---AAACAAAUUGCAUGAGUUUUAAAUCGAAUUCCAGAAUC-UGUGCAAUCCGUUCUCC ((((..(((.(((.(((((((((((((.((((.-...---...)))).))).)))))))))).)))........))).-.))))............ ( -23.80) >DroAna_CAF1 114054 85 + 1 GCACUAAUUGCGAAUUAAAGCUCAGCAUUUCGA-AGGCCCGAGCAAAUUGCAUGGUUUCAAAAUUGAAUUGUAGAAUC-UAUGCGG---------C (((.....)))........((((.((.......-..))..))))...((((((((.(((..............))).)-)))))))---------. ( -17.14) >consensus GCACUAAUUGCGAAUUAAAGCUCAGCAUUUUGA_ACG___AAACAAAUUGCAUGAGUUUUAAAUCGAAUUCCAGAAUC_UGUGCAAUCC______C .....((((.(((.((.((((((((((.((((...........)))).))).))))))).)).))))))).......................... ( -9.48 = -10.43 + 0.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:44 2006