Locus 6599

Sequence ID 2R_DroMel_CAF1
Location 20,648,919 – 20,649,016
Length 97
Max. P 0.613885
window10501

overview

Window 1

Location 20,648,919 – 20,649,016
Length 97
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 79.61
Mean single sequence MFE -26.52
Consensus MFE -16.13
Energy contribution -16.47
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.61
Structure conservation index 0.61
SVM decision value 0.16
SVM RNA-class probability 0.613885
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20648919 97 + 20766785
GUUUGCAGAAAGU-------CUUC-GGUUUCUUGGCGGCUUCGUGUAGUGCAGCAUUUAGCGUCUUGAUCGGUUUAUCACCGAUUAAUUAGAGUUUGAUAAAUAC
((((((((((((.-------(...-.)...)))((((.((..((((......))))..))))))(((((((((.....)))))))))......)))).))))).. ( -21.80)
>DroPse_CAF1 100802 85 + 1
--CUGCUG--GGU-------CU---------UCGGCGGCUUCGUGUAGUCCAGCAUUUAGCGUCUUGAUCGGUUUAUCACCGAUUAAUUAGAGUUUGAUAAAUAC
--..((((--((.-------((---------...(((....)))..))))))))(((.(((.(((((((((((.....))))))))...)))))).)))...... ( -23.50)
>DroGri_CAF1 185702 94 + 1
--UUUCUG--UUU-------CUCGCGCGGCGGCGUCGGCUUCGUGUAGCUCAGCAUUUAGCGUCUUGAUCGGUUUAUCACCGAUUAAUUAGAGUUUGAUAAAUAC
--....((--(((-------.((((((((.(((....)))))))))(((((.((.....))...(((((((((.....)))))))))...))))).)).))))). ( -26.30)
>DroMoj_CAF1 194933 83 + 1
---------------------UUG-GCUGGGUUGGCGGCUUCGUGUAGCUCAGCAUUUAGCGUCUUGAUCGGUUUAUCACCGAUUAAUUAGAGUUUGAUAAAUAC
---------------------...-((((((((((((....))).)))))))))(((.(((.(((((((((((.....))))))))...)))))).)))...... ( -25.30)
>DroAna_CAF1 107033 100 + 1
GUUCGCG---AGUCGGCCGACUUC-GG-GACUCGGCCGAUUCGUGUGGUGCAGCAUUUAGCGUCUUGAUCGGUUUAUCACCGAUUAAUUAGAGUUUGAUAAAUAC
...((((---(((((((((((...-.)-...)))))))))))))).(..((........))..)(((((((((.....))))))))).................. ( -38.70)
>DroPer_CAF1 111792 85 + 1
--CUGCUG--GGU-------CU---------UCGGCGGCUUCGUGUAGUCCAGCAUUUAGCGUCUUGAUCGGUUUAUCACCGAUUAAUUAGAGUUUGAUAAAUAC
--..((((--((.-------((---------...(((....)))..))))))))(((.(((.(((((((((((.....))))))))...)))))).)))...... ( -23.50)
>consensus
__UUGCUG__AGU_______CUU__G__G__UCGGCGGCUUCGUGUAGUCCAGCAUUUAGCGUCUUGAUCGGUUUAUCACCGAUUAAUUAGAGUUUGAUAAAUAC
.................................(((.(((..((((......))))..))))))(((((((((.....))))))))).................. (-16.13 = -16.47 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:43 2006