Locus 6595

Sequence ID 2R_DroMel_CAF1
Location 20,634,215 – 20,634,309
Length 94
Max. P 0.979629
window10495

overview

Window 5

Location 20,634,215 – 20,634,309
Length 94
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 64.21
Mean single sequence MFE -26.12
Consensus MFE -5.68
Energy contribution -5.27
Covariance contribution -0.42
Combinations/Pair 1.71
Mean z-score -3.58
Structure conservation index 0.22
SVM decision value 1.84
SVM RNA-class probability 0.979629
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20634215 94 + 20766785
CCAGU--AGUUAGAAACGGCUAUGACUGCUCCAAUGUUAAGCAGUCAUAGCCGUUUA-------UAGCCGGCUGUUGCAAUAAAACAGUUUAAACAAUUUUCA
.....--.((((.(((((((((((((((((.........))))))))))))))))).-------)))).(((((((.......)))))))............. ( -37.20)
>DroGri_CAF1 160630 80 + 1
UAUGCCUGGUUAUAAAUU-----------AGCU--GGAAAAUUGCCUUG---GCUUAG--AC--CAGUUGGCCAUUAUACUAAAUCAGCUGAAACGACUA---
......(((((.....((-----------((((--((..........((---(((...--..--.....)))))..........))))))))...)))))--- ( -16.25)
>DroSec_CAF1 84759 94 + 1
CAAGU--AGUUAUAAACGGCUAUUACUGCUCCAAUGUUAAGCAGUCAUAGCCGUUUA-------UAGCCGGCUGUUACAAUAAUACAGUUUAAACAGUUUUCA
.....--.(((((((((((((((.((((((.........)))))).)))))))))))-------)))).(((((((..(((......)))..))))))).... ( -33.60)
>DroSim_CAF1 85594 94 + 1
CAAGU--AGUUAUAAACGGCUAUUACUGCUCCAAUUCUAAGCAGUCAUAGCCGUUUA-------UAGCCGGCUGUUACAAUAAUACAGUUUAAACAGUUUUCA
.....--.(((((((((((((((.((((((.........)))))).)))))))))))-------)))).(((((((..(((......)))..))))))).... ( -33.60)
>DroEre_CAF1 124385 88 + 1
CAGGU--AGUUAUAAACU-----------UUCA--GUUAAGCGGCCAUGACUGCUUAGCGAUUGGUGUUGGCCAUUACAAUAAAUCAGCUUAAACCAUUUUGA
..(((--((((.......-----------....--(((((((((......)))))))))((((..(((((.......)))))))))))))...)))....... ( -20.70)
>DroYak_CAF1 89011 88 + 1
UUGGU--GGUUAUAAACU-----------UUCA--GUUAAACGGCCAUGACUGCUUAGCUAUUGGUGUUGGCUAUUACAAUAAAUCAGCUUAAACAAUUUUCA
.((((--(((((...(((-----------...(--(((((.(((......))).))))))...)))..))))))))).......................... ( -15.40)
>consensus
CAAGU__AGUUAUAAACG___________UCCA__GUUAAGCAGCCAUAGCCGCUUA_______UAGCCGGCUAUUACAAUAAAACAGCUUAAACAAUUUUCA
.......................................(((((((.......................)))))))........................... ( -5.68 =  -5.27 +  -0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:38 2006