Locus 6593

Sequence ID 2R_DroMel_CAF1
Location 20,629,468 – 20,629,562
Length 94
Max. P 0.999321
window10492

overview

Window 2

Location 20,629,468 – 20,629,562
Length 94
Sequences 5
Columns 94
Reading direction forward
Mean pairwise identity 95.32
Mean single sequence MFE -19.94
Consensus MFE -18.52
Energy contribution -18.52
Covariance contribution -0.00
Combinations/Pair 1.08
Mean z-score -2.19
Structure conservation index 0.93
SVM decision value 3.51
SVM RNA-class probability 0.999321
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20629468 94 + 20766785
UAAAGCAGCAAAUAUUAUAUUAUUUGCAUUCCGGUGGAAUUUAUCGGAGUUUUUCUCAUACCUUCUUGCUCUCUGCUCACGCCCAAUGCUUGAC
..((((((((((((......))))))).....((((((........(((.....)))..........((.....)))).))))...)))))... ( -21.40)
>DroSec_CAF1 80028 94 + 1
UAAAGCAGCAAAUAUUAUAUUAUUUGCAUUCCGGUAGAAUUUAUCGGAGUUUUUCUCAUACCUUCUUGCUCUCUGCCCACGCCCAAUGCUUGAC
..((((((((((((......)))))))((((((((((...)))))))))).................((.....))..........)))))... ( -21.10)
>DroSim_CAF1 80840 94 + 1
UAAAGCAGCAAAUAUUAUAUUAUUUGCAUUCCGGUAGAAUUUAUCGAAGUUUUUCUCAUACCUUCUUGCUCUCUGCCCACGCCCAAUGCUUGAC
..((((((((((((......))))))).....((((((.......((((............))))......)))))).........)))))... ( -20.42)
>DroEre_CAF1 111266 94 + 1
UAAAGCACCGAAUAUUAUAUUAUUUGCAUUCCGGUGGAAUUUAUCGGAGUUUUUCCCAAACCUUUUUGCUCUCUGCCCACGCCCAAUGCUUGAC
..(((((..(((((......)))))(((((((((((.....))))))))).................((.....))....))....)))))... ( -16.00)
>DroYak_CAF1 84164 93 + 1
UAAAGCAGCAAAUAUUAUAUUAUUUGCAUUCCGGUGGAAUUUAUCGGAGUU-UUCCCAAACCUUUUUGCUCUCUGCCCACGCCCAAUGCUUGAC
..((((((((((((......)))))))(((((((((.....))))))))).-...............((.....))..........)))))... ( -20.80)
>consensus
UAAAGCAGCAAAUAUUAUAUUAUUUGCAUUCCGGUGGAAUUUAUCGGAGUUUUUCUCAUACCUUCUUGCUCUCUGCCCACGCCCAAUGCUUGAC
..((((((((((((......)))))))((((((((((...)))))))))).................((.....))..........)))))... (-18.52 = -18.52 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:35 2006