| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 20,616,984 – 20,617,076 |
| Length | 92 |
| Max. P | 0.554119 |
| Location | 20,616,984 – 20,617,076 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 81.04 |
| Mean single sequence MFE | -19.20 |
| Consensus MFE | -8.18 |
| Energy contribution | -9.10 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.74 |
| Structure conservation index | 0.43 |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.554119 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 20616984 92 + 20766785 UGCAACUUAUAAAAUGAGAAAUGCUAA-UUCAAUGAUAGAUAUUAGCAUUUCAUGUAUGCAAAUGCAUUUCCAUUCAAAUUACCUUU-----------GCUAAA .((((....(((..(((((((((((((-(((.......)).)))))))))))((((((....))))))......)))..)))...))-----------)).... ( -20.00) >DroSec_CAF1 67239 92 + 1 CGCAACUUAUAGAAUGAGAAAUGCUAA-UUCAAUUAUAGAUAUUAGCAUUUCAUGUAUGCAAGUGCAUUUCCAUUCAAAUUAUCUUU-----------GCUAAA .((((..((..(((((.((((((((((-(((.......)).)))))))))))((((((....))))))...)))))....))...))-----------)).... ( -22.90) >DroSim_CAF1 68033 92 + 1 CGCAACUUAUAAAAUGAGAAAUGCUAA-UUCAAUUAUAGAUAUUAGCAUUUCAUGUAUGCAAAUGCAUUUCCAUCCAAAUUAACUUU-----------GCUAAA .((((............((((((((((-(((.......)).)))))))))))((((((....)))))).................))-----------)).... ( -20.20) >DroEre_CAF1 97953 92 + 1 UGCAACUUAUAAAAUGAGAAAUGCUAA-UUCAAUGAUAGCUAUUUGCAUUUCAUGUAUGCAAAUGCAUUUCCAUUCAAAUUAGCUUU-----------GCUGAA .(((((((((...)))))....(((((-((.((((...((.((((((((.......)))))))))).....))))..))))))).))-----------)).... ( -20.30) >DroYak_CAF1 71205 92 + 1 UGCAACUUAUAAAAUGAGAAAUGCUAA-UUCAAUGAUAGAUAUUUGCAUUUCAUGUAUGCAAAUACAUUUCCAUUCAAAUGGGCUUU-----------GCUAAA .(((((((((..((((.(((((((((.-........))).(((((((((.......)))))))))))))))))))...)))))..))-----------)).... ( -19.30) >DroAna_CAF1 72938 92 + 1 UAAAACUUAUUAAAUGAUAAAUGCUAAGUACAAUGUUAGGCAUUUGCAUUUCAUGCAUCGAAAUA------------AAUUAUUUUUUACCAGGCAGAGAUCGA ..............((((...((((..(((.((((.....))))(((((...)))))........------------..........)))..))))...)))). ( -12.50) >consensus UGCAACUUAUAAAAUGAGAAAUGCUAA_UUCAAUGAUAGAUAUUAGCAUUUCAUGUAUGCAAAUGCAUUUCCAUUCAAAUUAGCUUU___________GCUAAA .((..............(((((((.....................)))))))((((((....))))))..............................)).... ( -8.18 = -9.10 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:33 2006