Locus 6590

Sequence ID 2R_DroMel_CAF1
Location 20,613,434 – 20,613,549
Length 115
Max. P 0.958462
window10489

overview

Window 9

Location 20,613,434 – 20,613,549
Length 115
Sequences 5
Columns 115
Reading direction reverse
Mean pairwise identity 97.39
Mean single sequence MFE -18.40
Consensus MFE -17.26
Energy contribution -17.14
Covariance contribution -0.12
Combinations/Pair 1.07
Mean z-score -1.57
Structure conservation index 0.94
SVM decision value 1.49
SVM RNA-class probability 0.958462
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20613434 115 - 20766785
UUUUCGUCCACCAAAAGAAAGUCAAAAAAAGUGCAAGAAAAUGGUGGAAAUGAAAAAAAAAUACCAGAGUACUAAGAAGAACAACUUUCGGACAAUAAAGGUUACCUUAGGAAAG
(((((((((....................(((((.......(((((....(....).....)))))..)))))..((((......))))))))....((((...)))).))))). ( -18.00)
>DroSec_CAF1 63627 115 - 1
UUUUCGUCCACCAAAAGAAAGUCAAAAAGAGUGCAAGAAAAUGGUGGAAACGAAAAGAAAAUACCAGAGUAAUAAGAAGAACAACUUUCGGACAAUAAAGGUUACCUUAGGAAAG
(((((((((((((......(.((.....)).).........)))))))..)))))).......(((((((.............))))).))......((((...))))....... ( -18.08)
>DroSim_CAF1 64355 115 - 1
UUUUCGUCCACCAAAAGAAAGUCAAAAAGAGUGCAAGAAAAUGGUGGAAACGAAAAGAAAAUACCAGAGUAAUAAGAAGAACAACUUUCGGACAAUAAAGGUUACCUUAGGAAAG
(((((((((((((......(.((.....)).).........)))))))..)))))).......(((((((.............))))).))......((((...))))....... ( -18.08)
>DroEre_CAF1 94426 115 - 1
UUUUCGUCCACCGAAAGAAAGUCGAAAAGAGUGCAAGAAAAUGGUGGAAACGAAAAGAAAAUACCAGAGUAAUAAGAAGAACAACUUUCGGACAAUAAAGGUUACCUUAGGAAAG
......(((.(((((((....((........(((.......(((((....(.....)....)))))..))).......))....)))))))......((((...)))).)))... ( -19.06)
>DroYak_CAF1 67719 115 - 1
UUUUCGUCCACCAAAAGAAAGUCGAAAAGAGUGCUAGAAAAUGGUGGAAACGAAAAGAAAAUACCAGAGUAAUAAGAAGAACAACUUUCGGACAAUAAAGGUUACCUUAGGAAAG
(((((((((((((......(.((.....)).).........)))))))..)))))).......(((((((.............))))).))......((((...))))....... ( -18.78)
>consensus
UUUUCGUCCACCAAAAGAAAGUCAAAAAGAGUGCAAGAAAAUGGUGGAAACGAAAAGAAAAUACCAGAGUAAUAAGAAGAACAACUUUCGGACAAUAAAGGUUACCUUAGGAAAG
(((((((((((((......(.((.....)).).........)))))))..)))))).......(((((((.............))))).))......((((...))))....... (-17.26 = -17.14 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:32 2006