Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,284,660 – 3,284,758 |
Length | 98 |
Max. P | 0.728545 |
Location | 3,284,660 – 3,284,758 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 81.38 |
Mean single sequence MFE | -25.33 |
Consensus MFE | -18.70 |
Energy contribution | -19.03 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.61 |
Structure conservation index | 0.74 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.728545 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3284660 98 + 20766785 GCACGCGAA---UGCAUUGCAAGGCAUUUUGUUGCAUUUGCAACAAAGGAAUGCAAGUGGCAGCGACUAACAAGUAAUUUAC-GUACACAAUC--------------GCAACAACA ((.(((...---((((((((...)).(((((((((....))))))))).)))))).))))).((((.......(((...)))-........))--------------))....... ( -25.46) >DroPse_CAF1 72765 114 + 1 GCACGCGAAUUGUGCAUUGCAAAGCAUUUUGUUGCAUUUGCCACAAAGGAAUGCAAGUGGCAACGUCUAACAAGUAAUUUACCAUACACA--CAGAUACACACAAACACUGCCACG (((((.....))))).(((((...(.((((((.((....)).)))))))..)))))((((((..(.....)..(((........)))...--.................)))))). ( -25.30) >DroEre_CAF1 52335 100 + 1 GCACGCGAA---UGCAUUGCAAGGCAUUUUGUUGCAUUUGCAACAAAGGAAUGCAAGUGGCAGCGACUAACAAGUAAUUUAC-GUACACAAACCGAAGCACACA------------ ((.(((...---(((.(((((...(.(((((((((....))))))))))..)))))...))))))(((....))).......-..............)).....------------ ( -24.40) >DroYak_CAF1 52336 111 + 1 GCACGCGAA---UGCAUUGCA-GGCAUUUUGUUGCAUUUGCAACAAAGGAAUGCAAGUGGCAGCGACUAACAAGUAAUUUAC-GUACACAAUCCGAAGCACACACUCACAGCAACG ((.(((...---(((.(((((-..(.(((((((((....))))))))))..)))))...))))))(((....))).......-..............))................. ( -26.80) >DroAna_CAF1 49719 96 + 1 GCACGCGAA---UGCAUUGCAAGGCAUUUUGUUGCAUUUGCAACAAAGGAAUGCAAGUGGCAGCGGCUAACAAGUAAUUUAC-GUACACAAUCC---------------AACACA- ((.(((...---(((.(((((...(.(((((((((....))))))))))..)))))...))))))))...............-...........---------------......- ( -24.70) >DroPer_CAF1 81056 114 + 1 GCACGCGAAUUGUGCAUUGCAAAGCAUUUUGUUGCAUUUGCCACAAAGGAAUGCAAGUGGCAACGUCUAACAAGUAAUUUACCAUACACA--CAGAUACACACAAACACUGCCACG (((((.....))))).(((((...(.((((((.((....)).)))))))..)))))((((((..(.....)..(((........)))...--.................)))))). ( -25.30) >consensus GCACGCGAA___UGCAUUGCAAGGCAUUUUGUUGCAUUUGCAACAAAGGAAUGCAAGUGGCAGCGACUAACAAGUAAUUUAC_GUACACAAUCCGA__CACACA___ACAGCAACG ((.(((......((((((((...)).(((((((((....))))))))).)))))).)))))............(((........)))............................. (-18.70 = -19.03 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:55 2006