| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 20,600,978 – 20,601,075 |
| Length | 97 |
| Max. P | 0.556395 |
| Location | 20,600,978 – 20,601,075 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 84.79 |
| Mean single sequence MFE | -26.03 |
| Consensus MFE | -19.03 |
| Energy contribution | -20.53 |
| Covariance contribution | 1.50 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.09 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.556395 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 20600978 97 - 20766785 -UAAACUGUCAGCCAACAUUUAGUCAAAUGACUUUUACGUUACUUGGCUGCCGAGCAGAGGACAGCACUUCUCCACAUCGGGAUAUUCGCUGUCUGCU -....(((((((((((.....((((....))))..........)))))))....)))).(((((((.....(((......))).....)))))))... ( -28.16) >DroSec_CAF1 50954 97 - 1 -UAAACUGUCAGCCAACAUUUAGCCAAAUGACUUUUAAGUUACUUGGCUGCCGAGCAGAAGACAGCACUUCUCCACAUCGGAAUAUUCGCUGUCUGCU -....(((((.((........((((((.(((((....))))).)))))))).)).))).(((((((.....(((.....)))......)))))))... ( -28.40) >DroSim_CAF1 51736 97 - 1 -UAAACUGUCAGCCAACAUUUAGCCAAAUGACUUUUAAGUUACUUGGCUGCCGAGCAGAAGACAGCACUUCUCCACAUCGGAAUAUUCGCUGUCUGCU -....(((((.((........((((((.(((((....))))).)))))))).)).))).(((((((.....(((.....)))......)))))))... ( -28.40) >DroEre_CAF1 81598 97 - 1 -UAAACUGUCAGCAAACGUUUAGCCAAAUGACUUUUAAGUUGCUUGGCUGCCGAGCAGAGGACAGCACUUCUCCACAUCGGAAUAUUCGCUGUCUGCU -......(.((((.......(((((((..((((....))))..)))))))((((...(((((......)))))....)))).......)))).).... ( -28.30) >DroYak_CAF1 55101 97 - 1 -UAAACUGUCAGCAAACGUUUAGCCAAAUGACUUUUAAGUUGCUUGGCUGCCGAGCAGAGGACAGCACUUCUCCACAUCGGAAUAUUCGCUGUCUGCU -......(.((((.......(((((((..((((....))))..)))))))((((...(((((......)))))....)))).......)))).).... ( -28.30) >DroAna_CAF1 57262 79 - 1 GCAAACUGUCAGCAGACGUUUAGCGAAAUGACUUUUAAGUUGCCUGGCUGCCAAGCCGCUUCCACC--CACCCCAUAUCG------U----------- ((((((.(((....))))))).))((.((((((....))).((..((((....)))))).......--.....))).)).------.----------- ( -14.60) >consensus _UAAACUGUCAGCAAACAUUUAGCCAAAUGACUUUUAAGUUACUUGGCUGCCGAGCAGAGGACAGCACUUCUCCACAUCGGAAUAUUCGCUGUCUGCU .....(((((.((........((((((.((((......)))).)))))))).)).))).(((((((.....(((.....)))......)))))))... (-19.03 = -20.53 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:27 2006