| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 20,594,610 – 20,594,730 |
| Length | 120 |
| Max. P | 0.565896 |
| Location | 20,594,610 – 20,594,730 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 82.89 |
| Mean single sequence MFE | -49.43 |
| Consensus MFE | -34.21 |
| Energy contribution | -33.38 |
| Covariance contribution | -0.83 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.565896 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 20594610 120 + 20766785 UCUUCGUCCACGGAAGAGGACUGCUUCGAUCCAACAGACUUGCAGUCCUCAUCCAUGCUCACGCCAAGAUGGUGCAUAGCCGCAGCUGCAUGAUGGCGUUCUGCCGGCGGCAAAAGGUUU .......((..(((.(((((((((.((.........))...))))))))).))).((((..((((.....))))....(((((((.(((......)))..))).))))))))...))... ( -43.80) >DroPse_CAF1 48208 120 + 1 UCGUCGUCCAUGGAGGAGGACUGCUUGGAGCCCACCGACUUGCAGUCCUCGUCCAUUGUCACGCCCAGAUGGUGCAUGGCGGCCGCCGCAUGGUGCCGCUCUGCCGGCGGCAGGAGAUUC ..(((.((((((((.(((((((((((((......))))...))))))))).)))))(((((.((((....)).)).)))))(((((((((.((.....)).)).))))))).)))))).. ( -60.30) >DroGri_CAF1 96682 120 + 1 UCAUCAUCCAGCGACGAUGACUGCUUGGAGCCCACCGAUUUGCAGUCCUCAUCCAUGCUAACGCCCAAAUGAUGCAUGGCAACGGCGGCAUGAUGCCGCUCCGCUGGCGGCAGAAGAUUU .......((((((..((.((((((((((......))))...)))))).))..((((((...............))))))....((((((.....)))))).))))))............. ( -41.96) >DroWil_CAF1 90468 120 + 1 UCAUCGUCCAGCGAUGAGGAUUGCUUGGAGCCCACCGAUUUACAAUCCUCAUCCAUGGUCACGCCCAAAUGGUGCAUAGCCGCAGCUGCAUGAUGUCUUUCGGCAGGCGGCAGAAGAUUC ((.(((.(((..(((((((((((.((((......))))....)))))))))))..))).)..((((....)).))...(((((..((((.(((......)))))))))))).)).))... ( -45.80) >DroMoj_CAF1 104145 120 + 1 UCAUCGUCCAGCGAGGAGGAUUGCUUGGAUCCCACCGACUUGCAGUCCUCGUCCAUGCUGACGCCCAGAUUGUGCAUGGCCACGGCCGCAUGAUGCCGCUCCGCCGGCGGCAGCAGGUUG ....((((.(((((.(((((((((((((......))))...))))))))).))...))))))).((..((..(((..(((....))))))..))((((((.....))))))....))... ( -50.40) >DroAna_CAF1 52666 120 + 1 UCGUCGUCCAGCGAGGAGGACUGCUUGGAGCCCACCGACUUGCAGUCCUCGUCCAUGGUGACACCCAGGUGAUGCAUGGCGGCCGCCGCAUGGUGUCGUUCCGCCGGCGGCAGCAGGUUC .(((((((((..((.(((((((((((((......))))...))))))))).))..)))...(((....)))....))))))((.(((((.(((((......)))))))))).))...... ( -54.30) >consensus UCAUCGUCCAGCGAGGAGGACUGCUUGGAGCCCACCGACUUGCAGUCCUCAUCCAUGCUCACGCCCAGAUGGUGCAUGGCCGCAGCCGCAUGAUGCCGCUCCGCCGGCGGCAGAAGAUUC ............((.(((((((((((((......))))...))))))))).)).........(((...((.((((..(((....))))))).))((((......)))))))......... (-34.21 = -33.38 + -0.83)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:24 2006