Locus 6584

Sequence ID 2R_DroMel_CAF1
Location 20,593,149 – 20,593,249
Length 100
Max. P 0.620970
window10480

overview

Window 0

Location 20,593,149 – 20,593,249
Length 100
Sequences 5
Columns 108
Reading direction reverse
Mean pairwise identity 73.87
Mean single sequence MFE -22.64
Consensus MFE -12.66
Energy contribution -13.50
Covariance contribution 0.84
Combinations/Pair 1.17
Mean z-score -1.65
Structure conservation index 0.56
SVM decision value 0.18
SVM RNA-class probability 0.620970
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20593149 100 - 20766785
UACCUGUGUAUAUUAUAC--------CACCAAUAGAUGGUGCACCGUGUCGUACUCGUUUAUUAAAGUCAAGCAAAAGAUGGCGCACUCAACUUUUUCUUGCAUCAAU
.....(((((...)))))--------....((((((((((((........)))).))))))))...(.((((.(((((.(((.....))).))))).)))))...... ( -17.50)
>DroSec_CAF1 44445 93 - 1
UACUUGUGUAUAAUAUACAUAUCAUUCACCAAUAGAUGGUGCACCGUGUCGUACUUUUUUAUUGAAGUCAAGCAAAAGAUGGCGCACUCAACU---------------
....(((((((...))))))).....(((((.....)))))....(((((((.(((((...(((....)))..))))))))))))........--------------- ( -21.10)
>DroSim_CAF1 45162 93 - 1
UACUUGUGUAUAAUAUACAUAUCAUUCACCAAUAGAUGGUGCACCGUGUCAUACUUUUUUAUUGAAGUCAAGCAAAAGAUGGCGCACUCAACU---------------
....(((((((...))))))).....(((((.....)))))....(((((((.(((((...(((....)))..))))))))))))........--------------- ( -21.50)
>DroEre_CAF1 74957 107 - 1
UACAUGUGUGUAAAAUACAUAUCUUUCACCACUAGGUGGUGCAAUGUGUUGUGCUU-UUUAUUGAGCGCAAGCAAAAGAUGGAGCUCUACAAUUUGGCUUGUGUCAAU
...((((((.....))))))((((((((((((...))))))...(((.((((((((-......))))))))))))))))).............(((((....))))). ( -28.70)
>DroYak_CAF1 48444 104 - 1
UACAUAUGUGUAAAGUACAUAUCAUUCACCACUAGGUGGUGCAAUGUGUUGUGCUC--UUAUUGAACGCAAACAAAAGAUGGAGCUCUAAAAUUUA--UCGCAUCAAU
......(((((...(((((...((((((((((...)))))).))))...)))))((--.....))))))).......((((((.............--)).))))... ( -24.42)
>consensus
UACAUGUGUAUAAUAUACAUAUCAUUCACCAAUAGAUGGUGCACCGUGUCGUACUU_UUUAUUGAAGUCAAGCAAAAGAUGGCGCACUCAACUUU___U_G__UCAAU
....((((((.....)))))).....(((((.....)))))....(((((((.(((.....(((....)))....))))))))))....................... (-12.66 = -13.50 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:23 2006