| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 20,592,182 – 20,592,274 |
| Length | 92 |
| Max. P | 0.638864 |
| Location | 20,592,182 – 20,592,274 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 75.85 |
| Mean single sequence MFE | -17.07 |
| Consensus MFE | -3.55 |
| Energy contribution | -4.67 |
| Covariance contribution | 1.12 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.21 |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.638864 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 20592182 92 + 20766785 ACUUG---UGGUUCGUGGCUCUGCUAUCACUAAAGUGAAAA-AGAAAGAAGAAGCAAAGCA----------AAGAAGAAAUGUACGAAGAGCAAAAAUA-UUGAAUU ..(((---(..(((((((((.((((.((((....))))...-..........)))).))).----------....(....).))))))..)))).....-....... ( -16.34) >DroSec_CAF1 43944 105 + 1 ACUUGAUAUGGUUCGUGACUCUGCUAUCAAUAAAGUGAAAA-AGAAAGAAGAAGCAAAGCGAAAAUCGCAAAAUAAAAAAGGUACGAACAGGAAAAAUA-UUGAAUU ..(..((((.(((((((.((.((((.((.......(....)-........))))))..(((.....)))..........)).))))))).......)))-)..)... ( -16.36) >DroSim_CAF1 44555 105 + 1 ACUUGAUAUGGUUCGUGACUCUGCUAUUAAUAAAGUGAAAA-AGAAAGAAGAAGCAAAGCGAAAAUCGCAAAAUAAAAAAGGUACGAACAGGAAAAAUA-UUGAAUU ..(..((((.(((((((.((.((((..........(....)-..........))))..(((.....)))..........)).))))))).......)))-)..)... ( -16.35) >DroEre_CAF1 73609 103 + 1 ACUUGUUAUGGUUUGUGACUCUGCUAUCACCAGAGAGGUAAA----UAAAGAAGCAAAAUGAAAAUGGCUCAAUAAGAAAUGUACGAACUGCAAAAAUUCCUAAAUU ..((((...((((((((.(((((.......))))).......----....((.((...((....)).))))...........))))))))))))............. ( -17.00) >DroYak_CAF1 47183 107 + 1 ACUUGUUAUGGUUCGUGGCUCUGCUAUCAGCAGAGAGGAAAAAGAAAAAAGAAGCUACAUGAAAAUAACACAAUAAAAAUGCUACGAUCUGAAAAAAUCACUAUUUU ...((((((..((((((.((((((.....)))))).......((..........)).)))))).))))))...............(((.(....).)))........ ( -19.30) >consensus ACUUGAUAUGGUUCGUGACUCUGCUAUCAAUAAAGUGAAAA_AGAAAGAAGAAGCAAAGCGAAAAUCGCAAAAUAAAAAAGGUACGAACAGCAAAAAUA_UUGAAUU ..........((((((((((.((((.((......................)))))).)))......................))))))).................. ( -3.55 = -4.67 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:22 2006