Locus 6582

Sequence ID 2R_DroMel_CAF1
Location 20,590,667 – 20,590,768
Length 101
Max. P 0.650027
window10478

overview

Window 8

Location 20,590,667 – 20,590,768
Length 101
Sequences 3
Columns 106
Reading direction reverse
Mean pairwise identity 83.97
Mean single sequence MFE -20.60
Consensus MFE -18.68
Energy contribution -17.80
Covariance contribution -0.88
Combinations/Pair 1.15
Mean z-score -1.07
Structure conservation index 0.91
SVM decision value 0.24
SVM RNA-class probability 0.650027
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20590667 101 - 20766785
-AUUGUCUCCGGUUAUUGCAUUUCUAUCAAAAAACUUUCUGGACAUCGCUUGUAUGUACAU----AUAUCCGCAGGGAUACCGAUGGGAAUCGAAUGAAAAUUAAA
-...........(((((..(((((((((...........((.((((.......)))).)).----.(((((....)))))..)))))))))..)))))........ ( -16.00)
>DroSec_CAF1 42470 100 - 1
UUUUGUCUCCGGUUUUUGUAUUUCCAGCAAAAAACUUU------AUCGCUUGUACAUACAUAUGUAUAUCCGGACGGAUACAGCUGGGAAUCAAAUGAAAAUAUAA
...........(((((..((((((((((..........------.......((((((....))))))((((....))))...)))))))))...)..))))).... ( -23.00)
>DroSim_CAF1 43040 100 - 1
UUUUGUCUCCGGUUUUUGUAUUUCCAGCAAAAAACUUU------AUCGCUUGUACAUACAUAUGUAUAUCCGGACGGAUACAGCUGGGAAUCAAAUGAAAAUUUAA
..............((((.(((((((((..........------.......((((((....))))))((((....))))...)))))))))))))........... ( -22.80)
>consensus
UUUUGUCUCCGGUUUUUGUAUUUCCAGCAAAAAACUUU______AUCGCUUGUACAUACAUAUGUAUAUCCGGACGGAUACAGCUGGGAAUCAAAUGAAAAUUUAA
...............(((.(((((((((......................(((....)))......(((((....)))))..))))))))))))............ (-18.68 = -17.80 +  -0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:21 2006