Locus 658

Sequence ID 2R_DroMel_CAF1
Location 3,282,666 – 3,282,765
Length 99
Max. P 0.945617
window1167

overview

Window 7

Location 3,282,666 – 3,282,765
Length 99
Sequences 5
Columns 106
Reading direction forward
Mean pairwise identity 78.63
Mean single sequence MFE -22.18
Consensus MFE -11.70
Energy contribution -11.78
Covariance contribution 0.08
Combinations/Pair 1.14
Mean z-score -2.35
Structure conservation index 0.53
SVM decision value 1.35
SVM RNA-class probability 0.945617
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3282666 99 + 20766785
ACAAACUGAAUA-------UACACUGAAUAUUCAAUUGUUCACUCACUUCGAUUACGAUUACGAGCAAUUGACAAGCUAGUGUCGGAGCAAUUAUAAAUCAGAAUC
.....((((...-------.((((((.....((((((((((.......(((....)))....)))))))))).....))))))..((....)).....)))).... ( -19.80)
>DroSec_CAF1 51213 106 + 1
ACACAGUGAGUACACUGAAUACACUGAAUAUUCAAUUGUUCACUCACUUCGAUUACGAUUACGCGCAAUUGACAAGUGAGUGUUGGAGCAAUUAUAAAUCAGAAUC
...(((((....)))))......((((......(((((((((((((((((((((.((......)).))))))..)))))))....)))))))).....)))).... ( -29.30)
>DroSim_CAF1 61646 106 + 1
ACACAGUGAGUACACUGAAUACACUGAAUAUUCAAUUGUUCACUCACUUCGAUUACGAUUACGCGCAAUUGACAAGCGAGUGUUGGAGCAAUUAUAAAUCAGAAUC
...(((((....)))))......((((......((((((((((((.((((((((.((......)).))))))..)).))))....)))))))).....)))).... ( -25.40)
>DroEre_CAF1 50398 80 + 1
AA--------------------ACUGAAUAUUCAAUUGUUCACUCACUUCGAA------UACGCGCAAUUGACAAGCGAGUGUCGGAGCAAUUAUAAAUCUGAACC
..--------------------..((((((......))))))....((((((.------(((.(((.........))).))))))))).................. ( -16.00)
>DroYak_CAF1 50430 80 + 1
AA--------------------AGUGAAUAUUCAAGUGUUCACUUACUUCGAU------UACGCGCAACUGACAAGUGAGUGUCGGAGCAAUUAUAAAUCUGAAUC
.(--------------------(((((((((....)))))))))).(((((((------.((.(((.........))).))))))))).................. ( -20.40)
>consensus
ACA_A_UGA_UA_______UACACUGAAUAUUCAAUUGUUCACUCACUUCGAUUACGAUUACGCGCAAUUGACAAGCGAGUGUCGGAGCAAUUAUAAAUCAGAAUC
.......................((((......((((((((...((((.((..........))(((.........)))))))...)))))))).....)))).... (-11.70 = -11.78 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:54 2006