Locus 6577

Sequence ID 2R_DroMel_CAF1
Location 20,571,535 – 20,571,629
Length 94
Max. P 0.755817
window10466

overview

Window 6

Location 20,571,535 – 20,571,629
Length 94
Sequences 6
Columns 94
Reading direction forward
Mean pairwise identity 80.14
Mean single sequence MFE -27.51
Consensus MFE -16.59
Energy contribution -15.67
Covariance contribution -0.91
Combinations/Pair 1.44
Mean z-score -1.95
Structure conservation index 0.60
SVM decision value 0.49
SVM RNA-class probability 0.755817
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20571535 94 + 20766785
CUCCCACAUCUACUUCUUUUGGCGCAACUCCCACUACCAGUGCCGCCCCUGCUCCAAACAUGGGAAUGAGCCUUUACAGUUCACAGAGCUGGCC
.(((((..............(((((..............)))))((....))........)))))...........((((((...))))))... ( -20.04)
>DroPse_CAF1 25367 94 + 1
CAUCCACAGCCACUUCCUACGGAGCCACAGCCUCAGCCGCCUCUGCCACAGCUCCCAGCAUGGGAAUGAGCUUGUACAGCUCCCAGGCGUGGCC
........(((((..(((..(((((.((((.((((....(((.(((...........))).)))..)))).))))...))))).))).))))). ( -32.50)
>DroSim_CAF1 23149 94 + 1
CCCCCACAUCUACUUCCUAUGGCGCAACUCCCACCACUAGUGCCGCCCCUGCUCCAAACAUGGGCAUGAGCCUGUACGGUUCACAGAACUGGCC
...(((..(((.........(((((..............)))))((((.((.......)).)))).((((((.....)))))).)))..))).. ( -25.14)
>DroEre_CAF1 23586 94 + 1
CCCCCACAUCCACUACCUAUGGCGCAACUCCCACCACCAGUGCCGCCCCUGCUUCCAGCAUGGGCAUGAGCCUGUACGGUUCACAGAACUGGCC
...(((..((..........(((((..............)))))((((.(((.....))).)))).((((((.....))))))..))..))).. ( -27.84)
>DroYak_CAF1 23892 94 + 1
CCCCCACAUCCACUUCCUACGGCGCAACUCCCACCACCAGUGCCGCCCCAGCUCCCAGCAUGGGCAUGAGUCUGUACGGCUCACAGAACUGGCC
.........(((.(((....(((((..............)))))((((..((.....))..)))).((((((.....))))))..))).))).. ( -27.04)
>DroPer_CAF1 25322 94 + 1
CAUCCACAGCCACUUCCUAUGGAGCCACAGCCUCAGCCGCCUCUGCCACAGCUCCCAGCAUGGGAAUGAGCUUGUACAGCUCCCAGGCGUGGCC
........(((((..(((..(((((.((((.((((....(((.(((...........))).)))..)))).))))...))))).))).))))). ( -32.50)
>consensus
CCCCCACAUCCACUUCCUAUGGCGCAACUCCCACCACCAGUGCCGCCCCAGCUCCCAGCAUGGGAAUGAGCCUGUACAGCUCACAGAACUGGCC
....................(((((..............)))))(((......(((.....)))...(((((.....)))))........))). (-16.59 = -15.67 +  -0.91)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:11 2006