Locus 6576

Sequence ID 2R_DroMel_CAF1
Location 20,564,813 – 20,564,906
Length 93
Max. P 0.500000
window10465

overview

Window 5

Location 20,564,813 – 20,564,906
Length 93
Sequences 5
Columns 106
Reading direction reverse
Mean pairwise identity 88.83
Mean single sequence MFE -35.24
Consensus MFE -25.54
Energy contribution -26.38
Covariance contribution 0.84
Combinations/Pair 1.04
Mean z-score -1.60
Structure conservation index 0.72
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20564813 93 - 20766785
UCGGCUGGACAAGUCAGUAAGCCAGGAAACAAAACUAGG-----ACAAAACCGUGUCGCAGCGACCACCAGCAGUUU--------CGGUCUGGCCAAGUCCAGACG
.((.((((((..(((((...(((.(....).(((((..(-----(((......))))...((........)))))))--------.))))))))...)))))).)) ( -28.40)
>DroSec_CAF1 16148 98 - 1
UCGGCUGGACAAGUCCGUAAGCCAGGACACAAAACUAGGACCGGACAAAGCCAUGUCGCAGCGACCACCGGCAGUUU--------CGGUCUGGCCAAGUCCAGACG
.((.((((((..((((........)))).........((.((((((...(((..((((...))))....))).....--------..))))))))..)))))).)) ( -35.70)
>DroSim_CAF1 16323 98 - 1
UCGGCUGGACAAGUCCGUAGGCAAGGAAACAAAACUAGGACCGGACAAAGCCAUGUCGCAGCGACCACCGGCAGUUU--------CGGUCUGGCCAAGUCCAGACG
.((.((((((..((((((((....(....)....)))....)))))...((((..(((.(((..((...))..))).--------)))..))))...)))))).)) ( -34.30)
>DroEre_CAF1 16651 106 - 1
UUGGCUGGACAAGUCCGUGAGCCAGGAAGCAAAACUAGGUCCGGACAAAGCCGAGUCGCAGCGACCACCGGCAGUUUCGGUGUUUCGGUCUGGCCAAGUCCAGACG
(((((..(((..(((((.((.((.((........)).))))))))).....(((((((...))))((((((.....))))))..))))))..)))))......... ( -39.80)
>DroYak_CAF1 16742 98 - 1
UUGGCUGGACAAGUCCGUGAGCCAGGAAACAAAACUACGACCGGACAAAGCCGUGUCGCAGCGACCACCGGCAGUUU--------CGGUCUGGCCACGUCCAGACG
....((((((......(((.(((((....)........(((((((....((((.((((...))))...))))...))--------))))))))))))))))))... ( -38.00)
>consensus
UCGGCUGGACAAGUCCGUAAGCCAGGAAACAAAACUAGGACCGGACAAAGCCGUGUCGCAGCGACCACCGGCAGUUU________CGGUCUGGCCAAGUCCAGACG
...(((((....(((((....((.((........)).))..)))))........((((...))))..)))))...............((((((......)))))). (-25.54 = -26.38 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:10 2006