Locus 6575

Sequence ID 2R_DroMel_CAF1
Location 20,563,931 – 20,564,028
Length 97
Max. P 0.603725
window10464

overview

Window 4

Location 20,563,931 – 20,564,028
Length 97
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 80.87
Mean single sequence MFE -18.18
Consensus MFE -11.65
Energy contribution -11.73
Covariance contribution 0.08
Combinations/Pair 1.12
Mean z-score -1.59
Structure conservation index 0.64
SVM decision value 0.14
SVM RNA-class probability 0.603725
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20563931 97 + 20766785
UGCCUAUUUUUUGCAUCAAAUACAUAAAUUAAAAUCUCGCUCGAA-GGGAAAACCUGCAGCGGCAUUUGCUCUCAGCAAACUGCUGACACAUGUAUCC
...................((((((......((((.(((((...(-((.....)))..))))).))))....(((((.....)))))...)))))).. ( -20.60)
>DroPse_CAF1 16784 98 + 1
CAUACAUCUUUCGCAUCAAUAACAUAAAUUAAAAACUCAGCCGAAAAGGGAAACUCCCAGCGGCAUUUGCUUUGAGCAAGCUGCUGACAUAUGCAAAC
............((((...............................(((.....)))((((((..((((.....)))))))))).....)))).... ( -20.90)
>DroSim_CAF1 15442 96 + 1
UGCCUAUUUUUUGCAU-ACAUACAUAAAUUAAAAUCUCACCCGAA-GGGAAAACCUCCAGCGGCAUUUGCUCCAAGCAAACUGCUGACACAUGAAUCC
................-.....(((...............((...-.))........((((((..(((((.....)))))))))))....)))..... ( -16.50)
>DroYak_CAF1 15844 97 + 1
UGCCCUCUUUUUGCAUCAAAUACAUAAAUUAAAAUCUCGCCCGAA-AAGAAAACCACCAGCGGCAUUGGCUUUGAGCAAACUGCUGACACAUGAAUCC
.....((((((((............................))))-)))).......((((((.....((.....))...))))))............ ( -13.19)
>DroAna_CAF1 15941 96 + 1
CAUACAUCUUCCCCAUCAAUAACAUAAAUUAAAAACUCACCCAAA-AGGGAAACUCCCAGCGGCAUUCGCUUUGAGCAAGCUGCUGACACAUGC-UCC
.......................................(((...-.))).......(((((((.((.((.....)))))))))))........-... ( -17.00)
>DroPer_CAF1 16736 98 + 1
CAUACAUCUUUCGCAUCAAUAACAUAAAUUAAAAACUCAGCCGAAAAGGGAAACUCCCAGCGGCAUUUGCUUUGAGCAAGCUGCUGACAUAUGCAAAC
............((((...............................(((.....)))((((((..((((.....)))))))))).....)))).... ( -20.90)
>consensus
CACACAUCUUUCGCAUCAAAAACAUAAAUUAAAAACUCACCCGAA_AGGAAAACCCCCAGCGGCAUUUGCUUUGAGCAAACUGCUGACACAUGCAUCC
......................(((......................((....))..((((((..(((((.....)))))))))))....)))..... (-11.65 = -11.73 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:09 2006