Locus 6574

Sequence ID 2R_DroMel_CAF1
Location 20,557,406 – 20,557,504
Length 98
Max. P 0.696931
window10463

overview

Window 3

Location 20,557,406 – 20,557,504
Length 98
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 78.62
Mean single sequence MFE -29.02
Consensus MFE -17.02
Energy contribution -17.45
Covariance contribution 0.43
Combinations/Pair 1.10
Mean z-score -1.73
Structure conservation index 0.59
SVM decision value 0.34
SVM RNA-class probability 0.696931
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20557406 98 - 20766785
AUAGGCCUUAUAUUGUGUGCGCUCGCUUU---UGCGUGGCAGUAGGCGUAAAAACUGCCUCCAGGUGAGCUUCACGCUUAAUUAGAAUAUGCUUUAGGCAU
....(((((((((((((((.(((((((..---((.(.((((((..........)))))).))))))))))..)))))........))))))....)))).. ( -31.20)
>DroSec_CAF1 8915 92 - 1
AUAGGCCUUACAUUGUUUGUGCUCG---------CGUGGCAGUAGGCGUAAAAACUGCCUCCAGGUGAGCAUCACGCUUAAUUAGAAUACGCUUUAGGCAG
....((((......((..(((((((---------(.(((..((((.........))))..))).)))))))).))((.............))...)))).. ( -27.62)
>DroSim_CAF1 9031 98 - 1
AUAGGCCUUACAUUGUUUGCGCUCGCUUU---GGCGUGGCAGUAGGCGUAAAAACUGCCUCCAGGUGAGCAUCACGCUUAAUUAGAAUACGCUUUAGGCAG
.((.((((...((((.(..((((......---))))..))))))))).))....((((((..((((((((.....)))...........))))).)))))) ( -29.00)
>DroEre_CAF1 9100 81 - 1
---------------UCUGCGCUCGCUUU----GCGGGGCAGUAGGCGUAA-AACUGCCUCCAGGUGAGCUUCACGCUUAAUUAGAAUACGCUUGAGGCAU
---------------..(((((((((((.----(.((((((((........-.)))))))))))))))))((((.((.............)).))))))). ( -29.82)
>DroYak_CAF1 9140 95 - 1
ACAGACCUU-UAAAGUUUGUGCUCGCUUU----GCGUGGCAGUAGGCGUAC-AACUGCCUCCAGGUGAGCUUCACGCUUAAUUAGAAUACGCUUUAGGCAU
((((((...-....))))))((((((((.----(.(.((((((.(.....)-.)))))).)))))))))).....((((((...(....)...)))))).. ( -31.20)
>DroMoj_CAF1 13901 81 - 1
--------------------GCUCUCCAUCUGUGCCUGGCAGUAGGCGUAAAAAGUGCCUCCAGGUGCGCUUCACGCUUAAUUAGAAUACGCCAUCGGCAU
--------------------...........(((((((((..(((((((.((..(..((....))..)..)).)))))))....(....)))))..))))) ( -25.30)
>consensus
AUAGGCCUU__AUUGUUUGCGCUCGCUUU____GCGUGGCAGUAGGCGUAAAAACUGCCUCCAGGUGAGCUUCACGCUUAAUUAGAAUACGCUUUAGGCAU
.....................(.(((.......))).)((...(((((((......(((....)))((((.....))))........)))))))...)).. (-17.02 = -17.45 +   0.43)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:08 2006