Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 20,540,197 – 20,540,287 |
Length | 90 |
Max. P | 0.889711 |
Location | 20,540,197 – 20,540,287 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 74.71 |
Mean single sequence MFE | -31.27 |
Consensus MFE | -18.95 |
Energy contribution | -18.82 |
Covariance contribution | -0.13 |
Combinations/Pair | 1.35 |
Mean z-score | -1.69 |
Structure conservation index | 0.61 |
SVM decision value | 0.96 |
SVM RNA-class probability | 0.889711 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 20540197 90 + 20766785 GA------------CAUCCACGAUGCAGGCGGUGCUCCAAUCUGCGCACAGCAGCAGGCGGCUAAUGCUGUUGCUCUCCAUGCUGCUCAAUGCCGUAAGUCC------ ..------------.......(((...((((((((........))))..(((((((((((((.......)))))).....)))))))...))))....))).------ ( -29.30) >DroVir_CAF1 9169 95 + 1 -U------------CGAGCACAAUGCAGUCCGUGCACAAAACUGCACACAGGAGCAAGUGGUUCCUGCUGCUGCUCUCCAUGCUGCUGAAUGCGGUAAGUAAUACGCU -.------------.(((((....((((...(((((......))))).(((((((.....))))))))))))))))....((((((.....))))))........... ( -34.90) >DroPse_CAF1 7925 90 + 1 GC------------CAGACACAAUGCAGGCGGUGCACAAAACUGCACACAGCAGCAAAUGGCUGAUACUGUUGCUCUCAAUGCUGCUCAAUGCCGUAAGUCC------ ..------------..(((....(((.(((((((((......)))))..(((((((...(((..........))).....)))))))...))))))).))).------ ( -25.50) >DroMoj_CAF1 8667 91 + 1 -C------------CGAGCACAAUGCAGGCCGUGCACACAAAUGCACAGAGGAGCCAGUGGCUACUGCUGCUCUUCGCCAUGCUGCUGAAUGCGGUAAGUACAA---- -.------------...((.....)).(((.(((((......))))).(((((((.((..(...)..)))))))))))).((((((.....)))))).......---- ( -34.50) >DroAna_CAF1 5097 101 + 1 GAGCGUACAGCCAGGAGCCAGGAUGCAGGCGGUGCACAAAUCUGCACACCACAGCAAGCGGCUGUUGUUGCUGCUCUCCAUGCUGCUCAAUGCCGUAAGUC------- ..((.(((.((...((((.((.(((.(((..(((((......)))))..)..((((.(((((....))))))))))).))).))))))...)).))).)).------- ( -34.10) >DroPer_CAF1 6040 90 + 1 GC------------CAGACACAAUGCAGGCGGUGCACAAAACUGCACACAGCAGCAAAUGGCUGAUACUGUUGCUCUCAAUGCUGCUGAAUGCCGUAAGUCC------ ..------------..(((....(((.(((((((((......))))).((((((((...(((..........))).....))))))))..))))))).))).------ ( -29.30) >consensus GC____________CAGACACAAUGCAGGCGGUGCACAAAACUGCACACAGCAGCAAGUGGCUGAUGCUGCUGCUCUCCAUGCUGCUCAAUGCCGUAAGUCC______ ........................((..((((((((......)))))..(((((((((((((....))))))........)))))))......)))..))........ (-18.95 = -18.82 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:07 2006