Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 20,529,341 – 20,529,440 |
Length | 99 |
Max. P | 0.906561 |
Location | 20,529,341 – 20,529,440 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 73.19 |
Mean single sequence MFE | -22.24 |
Consensus MFE | -7.48 |
Energy contribution | -7.80 |
Covariance contribution | 0.32 |
Combinations/Pair | 1.13 |
Mean z-score | -2.00 |
Structure conservation index | 0.34 |
SVM decision value | 1.05 |
SVM RNA-class probability | 0.906561 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 20529341 99 + 20766785 AAAGGUGGCUAGC------GGCCACGCUUGAAAGUGACAAAUACAUAUGUACACUUUCUUACUAGG--CACUAA-AAUACUUAAAAAAACUAAAAAACGCGGCUCAAA ...((((.(((((------(....)))..((((((((((........))).)))))))....))).--))))..-................................. ( -21.60) >DroSec_CAF1 30984 86 + 1 AAAGUGGGCUAGC------GGCCACCCUUGAAAGUGACAAAU----AUGGACACUUUCUUGCUGGG--CACUAA----------AAAAACUGAAAAACGCGGCUCAAA ....((((((.((------((((...(..(((((((.((...----.))..)))))))..)...))--).....----------......(....).))))))))).. ( -24.30) >DroSim_CAF1 31072 86 + 1 AAAGUGGGCUAGC------GGCCACCCUUGAAAGUGACAAAU----AUGGACACUUUCUUGCUGGG--CACUAA----------AAAAACUUAAAAACGGGGCUCAAA ....((((((..(------((((...(..(((((((.((...----.))..)))))))..)...))--)..(((----------......)))....)).)))))).. ( -21.70) >DroEre_CAF1 31793 102 + 1 AAAAUGAGUUUGUGGGGACGGGGACACUUGAAAGUGACAAAU----AUGGAAACUUCC-AACUAAAUUCACUACAAAUUCUUA-AAAGUCUGGGAAACGCGGCUCAAA .....(((((((((((((...((.((((....))))......----.((((....)))-).))...))).))))))))))...-..((.((((....).))))).... ( -24.10) >DroYak_CAF1 31706 96 + 1 AAAAUGAGUUUGC------GGCGACCCUUGCAAGUGACAAAU----AUGGAAACUUCC-AACUAAGUUCACUACAAAUUCUUU-GAAGGCUGAAACACGCGGCUCAAA ....((((((.((------(((((...)))).(((((.....----.((((....)))-).......)))))...........-.............))))))))).. ( -19.52) >consensus AAAGUGGGCUAGC______GGCCACCCUUGAAAGUGACAAAU____AUGGACACUUUCUUACUAGG__CACUAA_AAU_CUU__AAAAACUGAAAAACGCGGCUCAAA ....((((((.........(....)....((((((..((........))...))))))..........................................)))))).. ( -7.48 = -7.80 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:02 2006