Locus 6568

Sequence ID	2R_DroMel_CAF1
Location	20,528,301 – 20,528,393
Length	92
Max. P	0.974223

overview

Window 5

Location	20,528,301 – 20,528,393
Length	92
Sequences	5
Columns	92
Reading direction	reverse
Mean pairwise identity	98.04
Mean single sequence MFE	-22.04
Consensus MFE	-20.32
Energy contribution	-20.52
Covariance contribution	0.20
Combinations/Pair	1.00
Mean z-score	-1.78
Structure conservation index	0.92
SVM decision value	1.73
SVM RNA-class probability	0.974223
Prediction	RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20528301 92 - 20766785
UGUGUCAGACACUUGACAUUAAACAUUAAAUGAAAUAAAGUCGCCGACGCUCCAUGUUUGGCAUCUAUUGCUGAUGACAUCGUUUGACAACU
..((((((((......((((........)))).......((((((((.((.....)))))))(((.......))))))...))))))))... ( -22.20)
>DroSec_CAF1 30131 92 - 1
UGUGUCAGACACUUGACAUUAAACAUUAAAUGAAAUGAAAUUGCCGACGCUCCAUGUUUGGCAUCUAUUGCUGAUGACAUCGUUUGACAACU
..((((((((...((.(((((..((((......))))....((((((.((.....))))))))........))))).))..))))))))... ( -22.00)
>DroSim_CAF1 30028 92 - 1
UGUGUCAGACACUUGACAUUAAACAUUAAAUGAAAUGAAAUUGCCGACGCUCCAUGUUUGGCAUCUAUUGCUGAUGACAUCGUUUGACAACU
..((((((((...((.(((((..((((......))))....((((((.((.....))))))))........))))).))..))))))))... ( -22.00)
>DroEre_CAF1 30733 92 - 1
UGUGUCAGACACUUGACAUUAAACAUUAAAUGAAAUGAAAUUGCCGACGCUCCAUGUUUGGCAUCUAUUGCUGAUGACAUCGUUUGACAACG
..((((((((...((.(((((..((((......))))....((((((.((.....))))))))........))))).))..))))))))... ( -22.00)
>DroYak_CAF1 30612 92 - 1
UGUGUCAGACACUUGACAUUAAACAUUAAAUGAAAUGAAAUUGCCGACGCUCCAUGUUUGGCAUCUAUUGCUGAUGACAUCGUUUGACAACG
..((((((((...((.(((((..((((......))))....((((((.((.....))))))))........))))).))..))))))))... ( -22.00)
>consensus
UGUGUCAGACACUUGACAUUAAACAUUAAAUGAAAUGAAAUUGCCGACGCUCCAUGUUUGGCAUCUAUUGCUGAUGACAUCGUUUGACAACU
..((((((((...((.(((((..((((......)))).....(((((.((.....))))))).........))))).))..))))))))... (-20.32 = -20.52 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:00 2006