Locus 6567

Sequence ID 2R_DroMel_CAF1
Location 20,526,186 – 20,526,284
Length 98
Max. P 0.619936
window10454

overview

Window 4

Location 20,526,186 – 20,526,284
Length 98
Sequences 4
Columns 110
Reading direction reverse
Mean pairwise identity 84.05
Mean single sequence MFE -27.67
Consensus MFE -21.06
Energy contribution -21.06
Covariance contribution 0.00
Combinations/Pair 1.17
Mean z-score -1.57
Structure conservation index 0.76
SVM decision value 0.18
SVM RNA-class probability 0.619936
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20526186 98 - 20766785
ACGAAAGUCCGCUAGAACAAAGAGGCCGC-AAAGGAAAUUGAGGUUUAUGAGCGGAAAAUGCAAUUGUGCGCUCGAGCAAU-----------GUCAGGAGGAUGUGGUCA
((....))...............((((((-(.......((((.(((..((((((.(.(((...))).).))))))...)))-----------.)))).....))))))). ( -23.50)
>DroSec_CAF1 27977 94 - 1
UCGAAAAUCCUCUUGAACAAAGGGGCCGCCAAAGGAAAUGGAGGCAUAUGAGCGGAAA-----AUUGUGCGCUCGAGCAAU-----------GUCAGGAGGAUAUGGUCA
..((..((((((((((.((.....(((.(((.......))).)))...((((((.(..-----....).)))))).....)-----------)))))))))))....)). ( -32.60)
>DroSim_CAF1 27870 99 - 1
UCGAAAAUCCGCUAGAACAAAGAGGCCGCCAAAGGAAAUGGAGGCUUAUGAGCGGAAAAUGCAAUUGUGCGCUCGAGCAAU-----------GUCAGGAGGAUGUGGUCA
..((..((((.((.((.((...(((((.(((.......))).))))).((((((.(.(((...))).).)))))).....)-----------))).)).))))....)). ( -26.30)
>DroYak_CAF1 28368 110 - 1
CCGAAAAUCCGCUAGAACAAAGAGGCCGCCAGAGGAAACGGAGGCUUAUGAGCGGGAAAUACAAUUGAGCGCUCGAGCAACGAUGCAUGCCAGUUAGGAGGAUGUGGUCA
(((...(((((((.........(((((.((...(....))).))))).((((((...............)))))))))...........((.....)).)))).)))... ( -28.26)
>consensus
UCGAAAAUCCGCUAGAACAAAGAGGCCGCCAAAGGAAAUGGAGGCUUAUGAGCGGAAAAUGCAAUUGUGCGCUCGAGCAAU___________GUCAGGAGGAUGUGGUCA
..((..((((.((.((......(((((.(((.......))).))))).((((((...............))))))..................)).)).))))....)). (-21.06 = -21.06 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:59 2006