Locus 6565

Sequence ID 2R_DroMel_CAF1
Location 20,523,513 – 20,523,608
Length 95
Max. P 0.883912
window10451

overview

Window 1

Location 20,523,513 – 20,523,608
Length 95
Sequences 3
Columns 103
Reading direction reverse
Mean pairwise identity 81.08
Mean single sequence MFE -24.72
Consensus MFE -16.27
Energy contribution -15.83
Covariance contribution -0.44
Combinations/Pair 1.10
Mean z-score -2.24
Structure conservation index 0.66
SVM decision value 0.93
SVM RNA-class probability 0.883912
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20523513 95 - 20766785
GGGAGUUGAAGCAACCAGAAAAGUGCAUAGU--------GCCAAUAAUGGCACUUGUUUUCCAACAGGAAAAUCUUGCUAUAUAGUUGUUACAACGCUUACAU
(((.((((.((((((.........(((.(((--------((((....))))))).(((((((....)))))))..)))......)))))).)))).))).... ( -27.96)
>DroSec_CAF1 25217 90 - 1
GGGAGUUGAAGCAAACCGAAAAGUGCAUAGUUCUCCAACGCCAAUAUUGGCACUUGUUUUCCAACCGGAAAAUCUUGCUAUAUAGCC-------------CGU
(((...((.(((((......((((.....(((....)))((((....))))))))(((((((....))))))).))))).))...))-------------).. ( -23.10)
>DroSim_CAF1 25181 90 - 1
GGGAGUUGAAGCAAACCGAAAAGUGCAUAGUUCUCCAACGCCAAUAUUGGCACUUGUUUUCCAACCGGAAAAUCUUGCUAUAUAGCC-------------CAU
(((...((.(((((......((((.....(((....)))((((....))))))))(((((((....))))))).))))).))...))-------------).. ( -23.10)
>consensus
GGGAGUUGAAGCAAACCGAAAAGUGCAUAGUUCUCCAACGCCAAUAUUGGCACUUGUUUUCCAACCGGAAAAUCUUGCUAUAUAGCC_____________CAU
.((...((.(((((.........................((((....))))....(((((((....))))))).))))).))...))................ (-16.27 = -15.83 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:57 2006