Locus 6561

Sequence ID 2R_DroMel_CAF1
Location 20,519,680 – 20,519,771
Length 91
Max. P 0.794458
window10446

overview

Window 6

Location 20,519,680 – 20,519,771
Length 91
Sequences 5
Columns 91
Reading direction forward
Mean pairwise identity 93.19
Mean single sequence MFE -26.14
Consensus MFE -24.34
Energy contribution -24.34
Covariance contribution -0.00
Combinations/Pair 1.08
Mean z-score -1.23
Structure conservation index 0.93
SVM decision value 0.60
SVM RNA-class probability 0.794458
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20519680 91 + 20766785
AAACUUCAAUAAACCGUUGGGUUAAUGCGCGGAUGUGCGGAUACUUUCAGUUAAUUUUGAAUUUUUCGAGGAACGGUGAAGGUCCGCGCUU
...........((((....))))...((((((((.(.((((....(((((......)))))...))))...........).)))))))).. ( -23.20)
>DroSec_CAF1 21383 91 + 1
AACCUUCAAUAAACCGUUGUGCUGAUGCGCGGACGUGCGGAUACUUUCAGUUAAUUUUGAAUUUUUCGAGGAACGGUGAAGGUCCGCGCUU
...............(((((((....)))).)))(((((((..((((((.(...((((((.....))))))...).))))))))))))).. ( -26.40)
>DroSim_CAF1 21325 91 + 1
AAACUUCAAUAAACCGUUGUGCAGAUGCGCGGACGUGCGGAUACUUUCAGUUAAUUUUGAAUUUUUCGAGGAACGGUGAAGGUCCGCGCUU
...............(((((((....)))).)))(((((((..((((((.(...((((((.....))))))...).))))))))))))).. ( -26.20)
>DroEre_CAF1 21546 91 + 1
AAACUUCGAUAAACCGUUGGGCUAAUGCGCGGAUGUGCGGAUACUUACAGUUAUUUUCGAAUUUUUCGAGGAACGGUGAAGGUCCGCGCUU
.............((((...((....))))))..((((((((..((((.((..(((((((.....))))))))).))))..)))))))).. ( -29.10)
>DroYak_CAF1 21577 91 + 1
AAACUUCGAUAAACCGUUGGGCAUAUGCGCGGAUGUGCGGAGACUUACAGUUAUUUUCGAAUUUUUCGAGGAACGGUGAAGGUCCGCGCUU
.............((((...((....))))))..(((((((..(((((.((..(((((((.....))))))))).))).)).))))))).. ( -25.80)
>consensus
AAACUUCAAUAAACCGUUGGGCUAAUGCGCGGAUGUGCGGAUACUUUCAGUUAAUUUUGAAUUUUUCGAGGAACGGUGAAGGUCCGCGCUU
.............((((...((....))))))..(((((((..((((((.(...((((((.....))))))...).))))))))))))).. (-24.34 = -24.34 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:52 2006