Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,271,839 – 3,271,932 |
Length | 93 |
Max. P | 0.888709 |
Location | 3,271,839 – 3,271,932 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 77.79 |
Mean single sequence MFE | -19.30 |
Consensus MFE | -6.76 |
Energy contribution | -7.68 |
Covariance contribution | 0.92 |
Combinations/Pair | 1.15 |
Mean z-score | -2.21 |
Structure conservation index | 0.35 |
SVM decision value | 0.95 |
SVM RNA-class probability | 0.888709 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3271839 93 + 20766785 -CUAAUUAAAUUUAAAAUUAAUCAGCGGCAUUUCGGUACAUGCAACGCAUAUGAAUUCAAAUGGAUUUAAGCCGCUGUGCUUAAAUGUUUUAAA -.........((((((((....(((((((..........((((...)))).(((((((....))))))).))))))).........)))))))) ( -21.72) >DroSec_CAF1 40562 93 + 1 -CUAAAUCAAUUAAGAAUUAAUCAGCGGCAGUUCGAUGCAUGCUAAGCAUAUGAAUUCACAUGGAUUUAAAACGCUGUGCUUAAAUGUUUUAAA -.((((.((.(((((.......((((((((......)))((((...)))).(((((((....)))))))...)))))..))))).)).)))).. ( -20.00) >DroSim_CAF1 51764 93 + 1 -CUAAAUCAAUUAAGAAUUAAUCAGCGGCAGUUCGAUGCAUGCUAAGCAUAUGAAUUCAAAUGGAUUUAAGCCGCUGCGUUUAAAUGUUUUAAA -.........((((((.((((.(((((((......((((.......)))).(((((((....))))))).)))))))...))))...)))))). ( -23.70) >DroEre_CAF1 39771 83 + 1 AAGAAAUCAAUUUAGAAUUAAUGAGCGGCAAUUCGGUGCAUGCUAAACAUAUGAAUUCAAGUGAAUUUAAACUG-----------AGUUUCGAA ..(((((((.((((((.......(((((((......))).))))...(((.((....)).)))..)))))).))-----------).))))... ( -15.40) >DroYak_CAF1 39799 78 + 1 -UCAAAUCAAUUAAGAAUUAAUGAGCGGCAUUUCGCU----GCUAAACGUAUGAAUUCAAAUGGAUUUAAACUG-----------UGUUUUAAA -.........((((((.......((((((.....)))----)))....((.(((((((....))))))).))..-----------..)))))). ( -15.70) >consensus _CUAAAUCAAUUAAGAAUUAAUCAGCGGCAGUUCGAUGCAUGCUAAGCAUAUGAAUUCAAAUGGAUUUAAACCGCUG_G_UUAAAUGUUUUAAA ..........((((((.......(((((((......))).)))).......(((((((....)))))))..................)))))). ( -6.76 = -7.68 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:51 2006