| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 20,503,455 – 20,503,575 |
| Length | 120 |
| Max. P | 0.661705 |
| Location | 20,503,455 – 20,503,575 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 90.61 |
| Mean single sequence MFE | -46.07 |
| Consensus MFE | -39.28 |
| Energy contribution | -40.00 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.661705 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 20503455 120 + 20766785 GUAUGAUACAGCGCACAAAGUUCGGGUUCGUGUUGCGCAGAGUGUCCAUCAACUUAGCCAGCUGCUCCUUGUACAGAUGGGACACGGUGCGGAACAUGCCCUUGCGGGUGCGGGCCCCGA ...........(((((...((..((((..(((((.((((..(((((((((.((..(((.....)))....))...))).))))))..)))).)))))))))..))..)))))........ ( -43.80) >DroVir_CAF1 5414 120 + 1 GUAUGAUACAGCGCACAAAAUUCGGGUUCGUGUUACGCAGCGUGUCCAUCAGCUUGGCCAGCUGUUCCUUAUACAAAUGCGACACGGUGCGGAACAUGCCCUUGCGCGUGCGCGCCCCAA ..........((((((.......((((..(((((.((((.((((((((((((((.....)))))............))).)))))).)))).)))))))))......))))))....... ( -44.42) >DroGri_CAF1 5075 120 + 1 GUAUGAUACAGCGCACAAAAUUUGGGUUCGUGUUCCGCAACGUGUCCAUCAGCUUGGCCAGCUGCUCUUUGUACAGAUGCGACACGGUACGGAACAUGCCCUUGCGCGUUCGCGCCCCAA (..(((....(((((........((((..((((((((...((((((((((((((.....))))((.....))...)))).))))))...)))))))))))).)))))..)))..)..... ( -44.60) >DroWil_CAF1 4807 120 + 1 GUAUGAUACAGCGCACAAAGUUCGGAUUCGUGUUGCGCAGUGUGUCCAUCAGUUUGGCCAAUUGCUCCUUAUACAGAUGGGACACAGUGCGGAACAUGCCCUUGCGGGUGCGCGCCCCGA ..........((((((...((..((...((((((.((((.(((((((....(((((.................))))).))))))).)))).)))))).))..))..))))))....... ( -47.73) >DroMoj_CAF1 5109 120 + 1 GUAUGAUACAGCGCACAAAGUUUGGGUUCGUGUUGCGCAGCGUGUCCAUCAGUUUGGCCAGCUGCUCCUUAUACAAAUGCGACACGGUGCGGAACAUGCCCUUGCGCGUGCGCGCCCCAA ..........((((((...((..((((..(((((.((((.(((((((((..((..(((.....)))......))..))).)))))).)))).)))))))))..))..))))))....... ( -48.50) >DroAna_CAF1 4668 120 + 1 GUAUGAUGCAGCGCACAAAGUUAGGGUUCGUGUUACGCAACGUGUCCAUCAGCUUGGCCAACUGCUCCUUGUACAGGUGCGACACGGUGCGGAACAUGCCCUUGCGGGUGCGGGCCCCGA ...((..((..(((((...((.(((((..(((((.((((.((((((.....(((((..(((.......)))..)))))..)))))).)))).)))))))))).))..))))).))..)). ( -47.40) >consensus GUAUGAUACAGCGCACAAAGUUCGGGUUCGUGUUGCGCAGCGUGUCCAUCAGCUUGGCCAGCUGCUCCUUAUACAGAUGCGACACGGUGCGGAACAUGCCCUUGCGCGUGCGCGCCCCAA ..........((((((...((..(((..((((((.((((.((((((((((.((..(((.....)))....))...)))).)))))).)))).)))))))))..))..))))))....... (-39.28 = -40.00 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:43 2006