Locus 6555

Sequence ID 2R_DroMel_CAF1
Location 20,502,047 – 20,502,167
Length 120
Max. P 0.595525
window10435

overview

Window 5

Location 20,502,047 – 20,502,167
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 81.94
Mean single sequence MFE -44.40
Consensus MFE -26.69
Energy contribution -27.00
Covariance contribution 0.31
Combinations/Pair 1.38
Mean z-score -2.01
Structure conservation index 0.60
SVM decision value 0.12
SVM RNA-class probability 0.595525
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20502047 120 + 20766785
GCCUCUAGUUCCUCGCUAAGGUCGCGUCUAACCUUCUCCGCCUUGGCACGGGCCGCCUUUUCGGCCUCUAGGUCCUCUUGAAUCUCGGCCAGCUGCGACUCCAGCUCGCGUUGAGCCUUU
...((.((..(((.((((((((.(.(.........).).))))))))..((((((......))))))..)))..))...)).....(((((((.(((((....).)))))))).)))... ( -38.50)
>DroVir_CAF1 4006 120 + 1
GCCUCGAGCUCCUCGCUGAGAUCGCGACGCAGUUUCUCGGCCUUGCUGCGCGCCACCUUCUCGGCCUCGAGAUCCUCUUGGAUCUCGGCCAGCUGGGACUCGAGCUCACGCUGCGCCUUC
((.(((((.((((.(((((((..(((.((((((...........))))))))).....))))((((..(((((((....)))))))))))))).)))))))))))............... ( -55.00)
>DroGri_CAF1 3667 120 + 1
GCUUCCAGUUCCUCGCUGAGAUCGCGACGCAACUUUUCGGCCUUGCUGCGCGCCACCUUCUCGGCCUCGAGAUCCUCUUGGAUUUCGGCCAGCUGGGACUCCAGUUCGCGCUGUGCCUUC
((...((((.....(((((((..(((.((((.(...........).))))))).....)))))))..((((((((....))))))))((.((((((....)))))).)))))).)).... ( -44.10)
>DroWil_CAF1 3399 120 + 1
GCUUCCAAUUCUUCGCUGAGAUCACGUCGCACCUUUUCGGCCUUGGCACGGGCUGCUUUCUCGGCCUCGAGAUCCUCUUGAAUCUCAGCCAAUUGGGAUUCAAGUUCACGCUGAGCCUUU
..............(((((((.............)))))))((..((.(((((((......))))).)).((....((((((((((((....)))))))))))).))..))..))..... ( -36.92)
>DroMoj_CAF1 3701 120 + 1
GCCUCCAAUUCCUCGCUGAGAUCGCGACGCAGUUUUUCGGCCUUGCUGCGCGCCGACUUUUCGGCUUCGAGGUCCUCCUGGAUCUCGGCCAGCUGGGAUUCGAGUUCACGCUGCGCCUUC
............((((.......))))((((((..((((.(((.((((.(((((((....)))))..((((((((....)))))))))))))).)))...)))).....))))))..... ( -49.40)
>DroAna_CAF1 3260 120 + 1
GCUUCGAGCUCUUCGCUGAGGUCACGACGCACCUUCUCGGCCUUGGCGCGGGCCGCCUUUUCUGCUUCCAGAUCCUCCUGGAUCUCGGCCAGUUGAGACUCCAGUUCUCGCUGGGCCUUC
((..((.((((..(((..(((((..((.......))..)))))..))).)))))).(((..(((...((((((((....)))))).)).)))..)))...(((((....))))))).... ( -42.50)
>consensus
GCCUCCAGUUCCUCGCUGAGAUCGCGACGCACCUUCUCGGCCUUGCCGCGCGCCGCCUUCUCGGCCUCGAGAUCCUCUUGGAUCUCGGCCAGCUGGGACUCCAGUUCACGCUGAGCCUUC
..............(((((((...((.(((.((...........)).)))...))...)))))))...(((((((....)))))))(((((((((((.......)))).)))).)))... (-26.69 = -27.00 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:42 2006