Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 20,501,340 – 20,501,452 |
Length | 112 |
Max. P | 0.515487 |
Location | 20,501,340 – 20,501,452 |
---|---|
Length | 112 |
Sequences | 6 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 82.62 |
Mean single sequence MFE | -41.68 |
Consensus MFE | -24.88 |
Energy contribution | -23.88 |
Covariance contribution | -1.00 |
Combinations/Pair | 1.46 |
Mean z-score | -2.06 |
Structure conservation index | 0.60 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.515487 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 20501340 112 + 20766785 CUUCCAACAGCUGCUGGGCUUCAGUAAGCUGUGAUUCCAUGUUGCUUGCAGACUUUACGGCGGCCGAGGCUUUUAGUUCGGCUUCCUCCAGCUGGUUUGUUAUGUUCUCAGC .....(((((((((((((.....((((((.(((....)))...)))))).........((.(((((((.(.....)))))))).)))))))).)).)))))........... ( -33.80) >DroGri_CAF1 3047 112 + 1 CCUCAAGCAGCUGUUGCGCCUCCGUCAGCUGUGAUUCCAUAUUGCUGGCGGAUUUGACAGCAGCGGAUGCCUUCAGUUCGGCCUCCUCCAGCUGAUUGGUAAUAUUUUCGGC ((...(((.(((((((((..(((((((((((((....))))..)))))))))..)).)))))))(((.(((........))).)))....)))....))............. ( -44.00) >DroWil_CAF1 2754 112 + 1 CUUCGAGAAGUUGUUGGGCUUCCGUUAGCUGGGAUUCCAUAUUGCUGGCUGAUUUCACUGCAGCGGAGGCCUUUAGUUCGGCCUCUUCCAGUUGAUUUGUUAUAUUCUCCGC ....(((((......((....))(((((((((((........(((((..((....))...)))))((((((........)))))))))))))))))........)))))... ( -34.70) >DroMoj_CAF1 3106 112 + 1 CCUCCAGCAGCUGCUGUGCCUCUGUCAGCUGCGAUUCCAUAUUGCUGGCUGACUUGACGGCCGCCGAGGCCUUCAGUUCGGCCUCCUCCAGCUGGUUGGUAAUGUUCUCCGC ...((((((((((..(.(((((.((((((((((((.....))))).)))))))..)).))))...((((((........))))))...))))).)))))............. ( -46.40) >DroAna_CAF1 2586 112 + 1 CCUCGAGCAGUUGCUGGGCUUCGGUCAGCUGCGACUCCAUGUUGCUGGCCGACUUGACGGCCGCGGAGGCCUUCAACUCAGCCUCCUCCAGCUGGUUGGUGAUGUUCUCGGC ..(((((..((..(.(((((((.((.....(((((.....))))).(((((......))))))).))))))).((((.((((........)))))))))..))...))))). ( -46.20) >DroPer_CAF1 2730 112 + 1 CCUCCAGCUGCUGCUGCGCUUCCGUCAGCUGCGACUCCAUGUUGCUGGCCGACUUGACGGCUGCCGAUGCCUUCAGCUCGGCCUCCUCCAGCUGAUUGGUGAUAUUCUCCGC ....((((....))))((((...((((((((((((.....))))).((((((.((((.(((.......))).)))).))))))......))))))).))))........... ( -45.00) >consensus CCUCCAGCAGCUGCUGGGCUUCCGUCAGCUGCGAUUCCAUAUUGCUGGCCGACUUGACGGCAGCCGAGGCCUUCAGUUCGGCCUCCUCCAGCUGAUUGGUAAUAUUCUCCGC .......(((((((((((..((.((((((...(((.....))))))))).))..)).))))....((((((........))))))....))))).................. (-24.88 = -23.88 + -1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:40 2006