| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 20,499,407 – 20,499,527 |
| Length | 120 |
| Max. P | 0.924805 |
| Location | 20,499,407 – 20,499,527 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 90.28 |
| Mean single sequence MFE | -30.68 |
| Consensus MFE | -29.29 |
| Energy contribution | -27.38 |
| Covariance contribution | -1.91 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.95 |
| SVM decision value | 1.16 |
| SVM RNA-class probability | 0.924805 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 20499407 120 - 20766785 AAGAGGAAUUGCAGAAGGAGAAGACGCAGAAGCGCAAAUACCAGCGUGAGUGCGAGGACAUGAUUGAAUCGCAGGAAGCCAUGAAUCGUGAGAUAAACUCACUUAAAACGAAACUACGGU ........(((...((((((....((((...((((........))))...))))....(((((((..((.((.....)).)).))))))).......))).)))....))).((....)) ( -25.00) >DroVir_CAF1 1470 120 - 1 AGGAGGAGCUGCAGAAGGAGAAGACGCAGAAGCGCAAAUACCAGCGCGAAUGCGAAGACAUGAUCGAAUCCCAGGAGGCCAUGAACCGUGAGAUUAACUCACUCAAAACAAAAUUGCGGU .......(((((((..((......((((...((((........))))...))))....((((..(...((....)))..))))..))(((((.....)))))...........))))))) ( -34.50) >DroGri_CAF1 1085 120 - 1 AGGAGGAGCUGCAGAAGGAGAAGACGCAGAAGCGCAAAUAUCAGCGCGAAUGCGAGGAUAUGAUCGAAUCGCAGGAGGCCAUGAACCGUGAGAUUAACUCACUCAAAACGAAAUUGCGGU .......(((((((..((......((((...((((........))))...))))....((((..(...........)..))))..))(((((.....)))))...........))))))) ( -32.00) >DroWil_CAF1 801 120 - 1 AGGAGGAACUGCAAAAGGAGAAGACACAGAAACGUAAAUACCAGCGUGAAUGUGAGGAUAUGAUUGAAUCGCAGGAGGCCAUGAACCGUGAGAUUAACUCACUGAAAACGAAAUUGCGGU .......(((((((..((......((((...((((........))))...)))).((...(..(((.....)))..).)).....))(((((.....)))))...........))))))) ( -26.60) >DroMoj_CAF1 1175 120 - 1 AGGAGGAGCUGCAGAAGGAGAAGACGCAAAAGCGCAAAUAUCAGCGCGAAUGCGAGGACAUGAUCGAAUCCCAGGAGGCCAUGAACCGUGAGAUUAACUCACUGAAAACGAAAUUGCGGU .......(((((((..((......((((...((((........))))...))))....((((..(...((....)))..))))..))(((((.....)))))...........))))))) ( -33.40) >DroAna_CAF1 643 120 - 1 AGGAGGAGCUGCAGAAGGAGAAGACGCAGAAGCGCAAGUACCAGCGCGAGUGCGAGGAUAUGAUCGAAUCGCAGGAAGCCAUGAAUCGGGAGAUCAACUCUCUGAAAACGAAACUCCGGU .((((......((((..(((....((((...((((........))))...))))..(((....((((.(((..(....)..))).))))...)))..))))))).........))))... ( -32.56) >consensus AGGAGGAGCUGCAGAAGGAGAAGACGCAGAAGCGCAAAUACCAGCGCGAAUGCGAGGACAUGAUCGAAUCGCAGGAGGCCAUGAACCGUGAGAUUAACUCACUGAAAACGAAAUUGCGGU .......(((((((..((......((((...((((........))))...))))....((((...(..((....))..)))))..))(((((.....)))))...........))))))) (-29.29 = -27.38 + -1.91)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:39 2006