Locus 6552

Sequence ID 2R_DroMel_CAF1
Location 20,491,703 – 20,491,805
Length 102
Max. P 0.630678
window10432

overview

Window 2

Location 20,491,703 – 20,491,805
Length 102
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 84.64
Mean single sequence MFE -27.73
Consensus MFE -21.90
Energy contribution -22.90
Covariance contribution 1.00
Combinations/Pair 1.06
Mean z-score -1.79
Structure conservation index 0.79
SVM decision value 0.20
SVM RNA-class probability 0.630678
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20491703 102 - 20766785
AUUAUAUAAUGCAACCAGAUGCGCUACCGCCAUGCAACUGAAAGUCCACUAUAUUUUCAGGGUGGACUUUAGAUUUUUCUAUGUGCCCGUUGUAUUUUCCG------------------U
.......(((((((((((.(((((....))...))).)))((((((((((..........))))))))))..................)))))))).....------------------. ( -25.90)
>DroSec_CAF1 15627 118 - 1
--UAUAUAAGGCAACCAGAUGCGCCACCGCCAUGCAACUGAAAGUACUCUAUAUUUUCAGGGUGAACUUUAGAUUUUUCUAUGUGUCCGUUGUAUUUUCCGUGCAUUAAUGACACAGCAU
--.......(....)...((((..((((((...))..(((((((((.....))))))))))))).....((((....))))((((((...(((((.....))))).....)))))))))) ( -28.90)
>DroSim_CAF1 15794 118 - 1
--UAUAUAUUGCAACCAGAUGCGCCACCGCCAUGCAACUGAAAGUGCACUAUAUUUUCAGGGUGAACUUUAGAUUUUUCUAUGUGUCCGUUGUAUUUUCCGUGCAUUAAUGACACAGCAU
--........(((......)))((((((((...))..(((((((((.....))))))))))))).....((((....))))((((((...(((((.....))))).....)))))))).. ( -28.40)
>consensus
__UAUAUAAUGCAACCAGAUGCGCCACCGCCAUGCAACUGAAAGUACACUAUAUUUUCAGGGUGAACUUUAGAUUUUUCUAUGUGUCCGUUGUAUUUUCCGUGCAUUAAUGACACAGCAU
.......((((((((..((((((.((((((...))..(((((((((.....))))))))))))).....((((....)))))))))).))))))))........................ (-21.90 = -22.90 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:38 2006