Locus 6549

Sequence ID 2R_DroMel_CAF1
Location 20,477,387 – 20,477,479
Length 92
Max. P 0.689086
window10429

overview

Window 9

Location 20,477,387 – 20,477,479
Length 92
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 78.86
Mean single sequence MFE -23.90
Consensus MFE -11.95
Energy contribution -12.53
Covariance contribution 0.59
Combinations/Pair 1.31
Mean z-score -2.13
Structure conservation index 0.50
SVM decision value 0.32
SVM RNA-class probability 0.689086
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20477387 92 + 20766785
AA-GA-AAAACAAAAACAACUUUUUA---GCCCAGUUGCAGCUGUU--CAGAGUGCAAUUUCUGCAAUGCAGCACACGCUUAUACGCUGCUUGGGCAUG
..-..-....................---((((((..(((((.((.--..(((((......((((...))))....)))))..)))))))))))))... ( -25.80)
>DroSec_CAF1 1235 92 + 1
AA-GA-AAAACAAAAACAACUUUUUA---UUCCAGGUGCAGCUGUU--CAGACUGCACUUUCUGCAAUGCAGCACACGCUUAUACGCUGCUUGGGCAUG
..-..-....................---....((((((((((...--.)).))))))))..(((...(((((............)))))....))).. ( -22.40)
>DroSim_CAF1 1234 92 + 1
AA-GA-AAAACAAAAACAACUUUUUA---UCCCAGUUGCAGCUGAU--CAGAGUGCAAUUUCUGCAAUGCAGCACACGCUUAUUCGCUGCUUGGGCAUG
..-..-....................---.(((((..(((((.((.--..(((((......((((...))))....)))))..)))))))))))).... ( -21.20)
>DroEre_CAF1 1227 93 + 1
AA-AACAAAACAAAAACAACUUUUAG---GCCCAGUUGCAUCUGCU--UAAAGUGCAAUUUUUACAAUGCAGCACACGCUUAGACGCUGCCUGGGCAUG
..-.......................---(((((((((((.((...--...)))))))..........(((((............)))))))))))... ( -24.10)
>DroYak_CAF1 1450 93 + 1
AA-AACAAAACAAAAACAACUUUUAA---GCCCAGUGGCACCUGUU--UAAAGUGCAAUUUUUGCGAUGCAGCACACGCUUAGACGCAGCCUGGGCAUG
..-.......................---((((((.(((((.(...--..).)))).....(((((....(((....)))....))))))))))))... ( -23.70)
>DroAna_CAF1 1250 98 + 1
GUGCA-AUAACAAAAAUAUUUUUUUUGGCUACCAAUUGCAUCGAGCCGAAAAGUAAAAUUAUGGCCAUGCAACACGCACUGAAACGGUGCCUGGGCAUA
((((.-....((((((.....))))))....(((.((((((.(.((((.((.......)).)))))))))))...((((((...)))))).))))))). ( -26.20)
>consensus
AA_GA_AAAACAAAAACAACUUUUUA___GCCCAGUUGCAGCUGUU__CAAAGUGCAAUUUCUGCAAUGCAGCACACGCUUAUACGCUGCCUGGGCAUG
..............................(((((((((((...........))))))).........(((((............))))).)))).... (-11.95 = -12.53 +   0.59)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:35 2006