Locus 6547

Sequence ID 2R_DroMel_CAF1
Location 20,475,188 – 20,475,308
Length 120
Max. P 0.793600
window10426

overview

Window 6

Location 20,475,188 – 20,475,308
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 79.41
Mean single sequence MFE -25.57
Consensus MFE -19.91
Energy contribution -20.03
Covariance contribution 0.12
Combinations/Pair 1.14
Mean z-score -1.59
Structure conservation index 0.78
SVM decision value 0.59
SVM RNA-class probability 0.793600
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20475188 120 - 20766785
AAAAUCAUCGUUUUUUAUACAAAAUGCGAUCGGUACUUUUACUGAGCGCUUAUUUACUACCGAAAAACUGGGCAAUGCAUCUUAAUGCUGUGUUAAGUCGGAAACUUAAAAUAGGCAACC
.......((((.((((....)))).))))((((((....))))))..((((((((...........(((..(((..((((....))))..)))..))).(....)...)))))))).... ( -25.00)
>DroSec_CAF1 17789 100 - 1
-------------------AAUUAUGCGCUCGGUAUUUUUACUGAGCGCUUACUUACUAACGAAGAACUGGGUAAUGGAUCUU-AUGCUGUGUCAAGAUGGAAACUUAAAAUAGGUAACC
-------------------......((((((((((....))))))))))(((((((.....((...((.(.((((......))-)).).)).)).....(....)......))))))).. ( -26.40)
>DroSim_CAF1 17387 100 - 1
-------------------AAUUAUGCGCUUGGUAUUUUUACUGAGCGCUUACUUACUACCGAAGAACUGGGUAAUGCAUCUU-AUGCUGUGUCAAGUCGGAAACUUAAAAUAGGUAACC
-------------------......(((((..(((....)))..)))))........((((...((.((.(..(..((((...-))))..)..).))))(....)........))))... ( -25.30)
>consensus
___________________AAUUAUGCGCUCGGUAUUUUUACUGAGCGCUUACUUACUACCGAAGAACUGGGUAAUGCAUCUU_AUGCUGUGUCAAGUCGGAAACUUAAAAUAGGUAACC
.........................((((((((((....))))))))))(((((((...........((.((((..((((....))))..)))).))..(....)......))))))).. (-19.91 = -20.03 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:32 2006