| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 20,457,579 – 20,457,669 |
| Length | 90 |
| Max. P | 0.603955 |
| Location | 20,457,579 – 20,457,669 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 90 |
| Reading direction | reverse |
| Mean pairwise identity | 84.52 |
| Mean single sequence MFE | -33.48 |
| Consensus MFE | -26.00 |
| Energy contribution | -25.70 |
| Covariance contribution | -0.30 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.603955 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 20457579 90 - 20766785 GGCACGCUUAAGUGGUGCGACGGCUGCUGGAGCGGUUGAUGCGGCUGAUAGCAGUGCGGAGCGUGAAGCAAAUUGUCCGACUUGGGCGAG ....(((((((((.(..((((((((((((.(((.((....)).)))..))))))).))..((.....))...)))..).))))))))).. ( -36.80) >DroPse_CAF1 378 90 - 1 GGCACGCUCAGGUGAUGGGUGUGGUGCUGUUGCUGCUGAAGUGGUUGGUAGCAUUGUGGGGCAUACAGCAGAUUGUCCGAUUUUGGCGAU ..((((((((.....)))))))).((((((((((.(...((((.(....).))))..).)))).)))))).((((.(((....))))))) ( -30.80) >DroSec_CAF1 356 90 - 1 GGCACGCUUAAGUGGUGCGACGGCUGCUGGAGCGGUUGAUGCUGCUGAUAGCAGUGCGGAGCGUAAAGCAAAUUAUCCGACUUGGGCGAG ....(((((((((((.((..(((((((((.((((((....))))))..))))))).))..))(.....).......)).))))))))).. ( -37.00) >DroSim_CAF1 352 90 - 1 GGUACGCUUAAGUGGUGCGACGGCUGCUGGAGCGGUUGAUGCGGCUGAUAGCAGUGCGGAGCGUAAAGCAAAUUAUCCGACUUGGGCGAG ....(((((((((((.((..(((((((((.(((.((....)).)))..))))))).))..))(.....).......)).))))))))).. ( -34.90) >DroEre_CAF1 352 90 - 1 GGCACACUUAAGUGGUGCGGCGCCUGCUGAAGCGGUAGAUGCGGCUGAUAGCAGUUCGGGGCGUAAAGCAGAUUGUCCGACUUGGGCGAG ....(((....))).(((.((((((((((.(((.((....)).))).....))))...))))))...)))..((((((.....)))))). ( -31.10) >DroYak_CAF1 352 90 - 1 GGCACGCUUAAGUGGUGUGACGGCUGCUGGAUCGGUAGAUGCGGCUGAUAGCAGUGCGGAGCGUAAAGCAGGUUGUCCGACUUGGGAGAA ...((((((..(((.(((..(((((((...(((....))))))))))...))).))).))))))....((((((....))))))...... ( -30.30) >consensus GGCACGCUUAAGUGGUGCGACGGCUGCUGGAGCGGUUGAUGCGGCUGAUAGCAGUGCGGAGCGUAAAGCAAAUUGUCCGACUUGGGCGAG ....(((((((((.........(((((((.(((.((....)).)))..))))))).((((((.....))......))))))))))))).. (-26.00 = -25.70 + -0.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:26 2006