Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 20,440,869 – 20,440,966 |
Length | 97 |
Max. P | 0.728038 |
Location | 20,440,869 – 20,440,966 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 78.05 |
Mean single sequence MFE | -33.37 |
Consensus MFE | -16.22 |
Energy contribution | -17.08 |
Covariance contribution | 0.86 |
Combinations/Pair | 1.32 |
Mean z-score | -2.13 |
Structure conservation index | 0.49 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.728038 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 20440869 97 - 20766785 CUGCUUAGCUGGGCAAAUAGCCCAUGGAUACACCCAAUAUGGACGGGUUACGUCCUCGUU-------U-------GCUAACUAGCGA---GCAAAGUUCGGCAGAGUUCGCCGA (((((.((((((((.....)))).(((......)))....(((((.....)))))..(((-------(-------(((....)))))---))..)))).))))).......... ( -35.60) >DroSec_CAF1 4335 96 - 1 CUGCUUAGCUGGGCAAAUAGCCCAUGGAUACACCCAAUAUAGACGGGUUACGUCCUCGU--------U-------GCUAACUGGCGA---GCAAAGUUCGGCAGAGUUCCCCGA ....((((((((((.....))))).((((..((((.........))))...))))....--------.-------)))))(((.(((---((...))))).))).......... ( -31.20) >DroSim_CAF1 4195 97 - 1 CUGCUUAGCUGGGCAAAUAGCCCAUGGAUACACCCAAUAUAGACGGGUUACGUCCUCGUU-------U-------GCUAACUGGCGA---GCAAAGUUCGGCAGAGUUCGCCGA (((((.((((((((.....))))..((((..((((.........))))...))))..(((-------(-------(((....)))))---))..)))).))))).......... ( -34.10) >DroEre_CAF1 10787 97 - 1 CUGCUUAGCUGGGCAAACAGCCCGUGGAUACAGUCAAUAUGAACGGGUCACGUCCUAGUU-------U-------GCUAACUAGCGA---GCAAAGUUCCGCAGAGUUCGUGGA .(((((.(((((((((((((..(((((...(..((.....))..)..)))))..)).)))-------)-------))...)))))))---)))....(((((.......))))) ( -32.00) >DroYak_CAF1 4329 84 - 1 CUGCUUAGCUGGGCAAAUAGCCCGUGGAUACAGUCAAUAUGGACG-------------UU-------C-------GCUAACUAGCGA---GCAAAGUUCCGCAGAGUUCGCAGA ((((..((((((((.....))))(((((.((.(((......)))(-------------((-------(-------(((....)))))---))...)))))))..)))).)))). ( -35.50) >DroAna_CAF1 5867 113 - 1 CCGCUUAGCUCGGCAAAUAUUCGAUUUAUACUGUCAAUACCG-CGGGUUGCGUCUUAGUUGUUAGUUUACUGCCAGGUAACUGGCGACUAGUAAAGCUCCCCAGAGUUCACAGA ......(((((.((...((((.(((.......)))))))..)-)(((..((...(((((((((((((.(((....))))))))))))))))....))..))).)))))...... ( -31.80) >consensus CUGCUUAGCUGGGCAAAUAGCCCAUGGAUACACCCAAUAUGGACGGGUUACGUCCUCGUU_______U_______GCUAACUAGCGA___GCAAAGUUCCGCAGAGUUCGCCGA .(((((((((((((.....))))).................((((.....)))).....................))))...))))...........(((((.......))))) (-16.22 = -17.08 + 0.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:21 2006