Locus 6537

Sequence ID 2R_DroMel_CAF1
Location 20,433,094 – 20,433,188
Length 94
Max. P 0.956896
window10411

overview

Window 1

Location 20,433,094 – 20,433,188
Length 94
Sequences 6
Columns 95
Reading direction forward
Mean pairwise identity 70.23
Mean single sequence MFE -25.52
Consensus MFE -9.64
Energy contribution -8.42
Covariance contribution -1.22
Combinations/Pair 1.67
Mean z-score -2.27
Structure conservation index 0.38
SVM decision value 1.47
SVM RNA-class probability 0.956896
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20433094 94 + 20766785
AAUUGGUAUUCAGGAAACAUAUACCCGACCCAUCCGUUGAAAACGGCUAAUCAGUCCA-AGUUUUUUGGCUUGGCAAAAAAUUGGGUUUUGUAAA
....(((((...(....)..))))).((((((.((((.....)))).......(.(((-((((....)))))))).......))))))....... ( -25.20)
>DroPse_CAF1 56518 90 + 1
AAUUGGGAAUCAGGAAACAU-----CGUCUUCUCUUUUGUAGGUAGCUCUGCGGCUAAUAUUGCUUUAGUAUGCAAACAAAUUGAGGAUGGUAAA
............(....)((-----(((((((...(((((..(((...(((.(((.......))).)))..)))..)))))..)))))))))... ( -24.20)
>DroSec_CAF1 42497 92 + 1
AAUUGGUAAUCAGGAAACAUAUGCGCGACCCAUCCGUUGAAAGCGG--ACUCAGUCGA-AGUCUUUUGGCUGGGCAAAAAAUUGGGUUUUGUAAA
............(....)...((((.(((((((((((.....))))--)(((((((((-(....))))))))))........)))))).)))).. ( -29.80)
>DroSim_CAF1 42918 94 + 1
AAUUGGUAAUCAGGAAACAUAUGCCCGACCCAUCCGUUGAAAGCGGCUACUCAGCCGA-AGUCUUUUGGCUGGGCAAAAAAUUGGGUUUUGUAAA
....((((....(....)...)))).((((((.((((.....))))...(((((((((-(....))))))))))........))))))....... ( -28.70)
>DroYak_CAF1 43338 78 + 1
AAUGGGUAAUCAGGAAACGUAUACCCGACUCAUCCGUUGAAAGCGGCUUCUCAGUCGA-AGUCUUUU----------------GGGUUUUGUAAA
..((((((....(....)...))))))((..(((((..((...(((((....))))).-..))...)----------------))))...))... ( -21.00)
>DroPer_CAF1 46661 90 + 1
AAUUGGGAAUCAGGAAACAU-----CGUCUUCUCUUUUGUAGGUAGCUCUGCGGCUAAUAUUGCUUUAGUAUGCAAACAAAUUGAGGAUGGUAAA
............(....)((-----(((((((...(((((..(((...(((.(((.......))).)))..)))..)))))..)))))))))... ( -24.20)
>consensus
AAUUGGUAAUCAGGAAACAUAU_CCCGACCCAUCCGUUGAAAGCGGCUACUCAGCCGA_AGUCUUUUGGCUUGGCAAAAAAUUGGGUUUUGUAAA
............(....)........(((((..((((.....)))).......(((((.......))))).............)))))....... ( -9.64 =  -8.42 +  -1.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:18 2006