Locus 6530

Sequence ID 2R_DroMel_CAF1
Location 20,417,034 – 20,417,139
Length 105
Max. P 0.848327
window10391

overview

Window 1

Location 20,417,034 – 20,417,139
Length 105
Sequences 6
Columns 110
Reading direction forward
Mean pairwise identity 80.74
Mean single sequence MFE -39.97
Consensus MFE -26.53
Energy contribution -25.48
Covariance contribution -1.05
Combinations/Pair 1.37
Mean z-score -2.10
Structure conservation index 0.66
SVM decision value 0.78
SVM RNA-class probability 0.848327
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20417034 105 + 20766785
UGAACAGGAUGAACUGCUGUCUCAGCAGGGCAAUUUGCGAGAGGAACUGCUCAACUGCGACCAAAAGGAACUAUUUCAGUUCUUGCAGGAGGAAGAGGAACUGCA-----
......((.((..((((((...))))))..))..(((((.(((......)))...)))))))...(((((((.....)))))))((((............)))).----- ( -28.20)
>DroVir_CAF1 36833 110 + 1
GGAGCAGGAUGAGCUGCUGUCGCAGCAGGCGAAUCUGCGCGAGGAGCUGCUCAAUUGCGAUCAGAAGGAGCUGUUUCAGUUUUUGCAGGAGGACGACGAGCUGCUGGCCA
(((((((..(((((.(((.((((.(((((....))))))))).).)).))))).(((((.((...((((((((...))))))))....))...)).))).)))))..)). ( -39.20)
>DroPse_CAF1 30096 105 + 1
CGAGCAGGAAGAGCUGCUCUCGCAGCAGGGGAAUCUGCGCGAGGAGCUGCUCAAUUGCGAGCAGAAGGAGCUCUUUCAGUUCCUCCAGGAGGAUAACGAGAUGCC-----
...((((((((((((.(((((((.(((((....))))))))))...((((((......)))))).)).)))))))))...(((((...)))))........))).----- ( -47.60)
>DroMoj_CAF1 38332 110 + 1
GGAGCAGGAUGAGCUGCUGUCACAGCAGGCGAAUUUGCGCGAGGAGCUGCUCAAUUGCGAUCAGAAGGAAUUGUUUCAGUUUCUGCAAGAGGACGAAGAGCUCUUGGGCA
.((((((......((((((...))))))(((......)))......))))))...(((.......((((((((...)))))))).((((((.........)))))).))) ( -34.80)
>DroAna_CAF1 22605 105 + 1
AGAGCAGGACGAGCUGCUGUCGCAGCAGGGUAAUCUCCGCGAGGAGUUGCUUAACUGUGACCAGAAGGAGCUCUUUCAGUUUCUGCAGCUGGAUGAAGACGAGCU-----
...((((((((((((.(((((((((..((((((.((((....))))))))))..)))))))....)).))))).....).))))))((((.(.......).))))----- ( -42.40)
>DroPer_CAF1 29814 105 + 1
CGAGCAGGAAGAGCUGCUCUCGCAGCAGGGGAAUCUGCGCGAGGAGCUGCUCAAUUGCGAGCAGAAGGAGCUCUUUCAGUUCCUCCAGGAGGAUAACGAGAUGCC-----
...((((((((((((.(((((((.(((((....))))))))))...((((((......)))))).)).)))))))))...(((((...)))))........))).----- ( -47.60)
>consensus
CGAGCAGGAUGAGCUGCUGUCGCAGCAGGGGAAUCUGCGCGAGGAGCUGCUCAAUUGCGACCAGAAGGAGCUCUUUCAGUUCCUGCAGGAGGAUGACGAGCUGCU_____
...((((...((((.(((.((((.(((((....))))))))).).)).))))..)))).......(((((((.....))))))).......................... (-26.53 = -25.48 +  -1.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:59 2006