Locus 6529

Sequence ID 2R_DroMel_CAF1
Location 20,411,623 – 20,411,719
Length 96
Max. P 0.873228
window10390

overview

Window 0

Location 20,411,623 – 20,411,719
Length 96
Sequences 5
Columns 102
Reading direction forward
Mean pairwise identity 79.57
Mean single sequence MFE -29.38
Consensus MFE -15.14
Energy contribution -15.66
Covariance contribution 0.52
Combinations/Pair 1.13
Mean z-score -2.25
Structure conservation index 0.52
SVM decision value 0.88
SVM RNA-class probability 0.873228
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20411623 96 + 20766785
GUGGCGCUGCCAGCUAGGACUGCCACCUGGCAGCAAUGCCACAUACUUUGCGCU------CUGGUGCUGCCAUAUCCGAUUUAAUUUUAAUGUGAUUUUACA
(((((((((((((...((....))..))))))))...))))).......((((.------...))))...(((((..((......))..)))))........ ( -31.10)
>DroSec_CAF1 21014 96 + 1
GUGGCGCUGCCACCUAAGGCUGCCAUUUGGCAACAUUGCCACUUAUUUUGCGCU------CUGGUGCUGCCAUAUCCGAUUUCAUUUUAAUGAGAUUUAACA
(((((((.(((......))).))....(((((....)))))........((((.------...)))).)))))....((((((((....))))))))..... ( -29.00)
>DroSim_CAF1 21399 96 + 1
GUGGCGCUGCCACCUAAGGUUGCCACUUGGCAACACUGCCACUUAUUUUGCGCU------CUGGUGCUGCCAUAUCCGAUUUCAUUUUAAUGAGAUUUAACA
(((((((.((((....((((((((....)))))).))((((.......)).)).------.)))))).)))))....((((((((....))))))))..... ( -28.60)
>DroEre_CAF1 21605 102 + 1
GGGGCGCUGCCACAUAGGACUGCCACCUGGCAGUACUGCCAUUUACUUUCCGCGCGGGUGCUGGUGCUGCCAUAUCCGAUUUCCUUUUAAUAUGAUUUAACA
((((((...((.....))..)))).))((((((((((..((((..(.......)..))))..)))))))))).............................. ( -29.50)
>DroYak_CAF1 21506 83 + 1
GUGGCGCUGC-------------CACCUGGCAGUGCUGCCAUUUACUUUUCGCG------CUGGUGCUGCCAGAUCCGAUUCCAUUAUAAUAGGAUUUAAAA
(..(((((((-------------(....))))))))..)..........(((..------((((.....))))...))).(((.........)))....... ( -28.70)
>consensus
GUGGCGCUGCCACCUAAGACUGCCACCUGGCAGCACUGCCACUUACUUUGCGCU______CUGGUGCUGCCAUAUCCGAUUUCAUUUUAAUGAGAUUUAACA
((((((((((((...............)))))))...)))))...................(((.....))).............................. (-15.14 = -15.66 +   0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:57 2006