Locus 6528

Sequence ID 2R_DroMel_CAF1
Location 20,405,352 – 20,405,461
Length 109
Max. P 0.638564
window10389

overview

Window 9

Location 20,405,352 – 20,405,461
Length 109
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 82.00
Mean single sequence MFE -20.12
Consensus MFE -11.94
Energy contribution -12.02
Covariance contribution 0.08
Combinations/Pair 1.12
Mean z-score -1.96
Structure conservation index 0.59
SVM decision value 0.22
SVM RNA-class probability 0.638564
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20405352 109 - 20766785
AUAAACAAAACCGGUUUCGUAGACCAAUUUAAGAUCGCUAAAAGAUAUCUUAAAUUCCUUUUGCUAUAUUUACGUAAGAAAAUCAUAUUUUACG------AAAGCAGCU--UGGA--UA-
............((((.....)))).(((((((((..(.....)..)))))))))(((....(((...(((.(((((((........)))))))------)))..))).--.)))--..- ( -20.20)
>DroSec_CAF1 14791 104 - 1
AUCAACAAAACCGGUUUCGUAAACCAAUUUAAGAUCGCUAAGAGAUAUCUUAAAUUCCUUUUGCUAUAUUUACGUAAGAAAAUAAUAUUUUACG------AUA--------UGGA--UAU
..........(((...(((((((..((((((((((..(.....)..))))))))))..........(((((.(....).)))))....))))))------)..--------))).--... ( -18.60)
>DroSim_CAF1 15078 104 - 1
AUCAACAAAACCGGUUUCGUAGACCAAUUUAAGAUCGCUAAGAGAUAUCUUAAAUUCCUUUUGCUAUAUUUACGUAAGAAAAUCAUAUUUUACG------AUA--------UGGA--UAU
.....(((((..((((.....))))((((((((((..(.....)..))))))))))..)))))((((((...(((((((........)))))))------)))--------))).--... ( -18.80)
>DroEre_CAF1 15190 112 - 1
AUAAACAAAACCGGUUUCUUAGACCAAUUUAAGAUCGCUAAAUGAUAUCUUAAAUUCCUUUUGAUAUAUUUGCGUAACAAAAACAUAUUUCAUAUGUCUAGAAAC--------GAUUUAU
.............((((((.((((.((((((((((..(.....)..))))))))))..(((((.(((......))).))))).............))))))))))--------....... ( -18.80)
>DroYak_CAF1 14996 120 - 1
AUAAACAAAACCGGUUUCCUAGACCCAUUUAAGAUCGCCAAAUGAUAUCUUAAAUUCCUUUUGAUAUAUUUACGUAAAAAAAACGUAUUUUAUAUGUCUAGAAGCUGCGUCUAGAUUUAU
.........(((((((((.(((((..(((((((((..(.....)..)))))))))........(((((..(((((.......)))))...))))))))))))))))).)).......... ( -24.20)
>consensus
AUAAACAAAACCGGUUUCGUAGACCAAUUUAAGAUCGCUAAAAGAUAUCUUAAAUUCCUUUUGCUAUAUUUACGUAAGAAAAUCAUAUUUUACG______AAA_C______UGGA__UAU
.....(((((..((((.....))))((((((((((..(.....)..))))))))))..)))))..........((((((........))))))........................... (-11.94 = -12.02 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:56 2006