| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 20,403,391 – 20,403,489 |
| Length | 98 |
| Max. P | 0.946627 |
| Location | 20,403,391 – 20,403,489 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 76.55 |
| Mean single sequence MFE | -38.54 |
| Consensus MFE | -23.98 |
| Energy contribution | -25.56 |
| Covariance contribution | 1.58 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.62 |
| SVM decision value | 1.36 |
| SVM RNA-class probability | 0.946627 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 20403391 98 - 20766785 CUUAGGGGGUAGGGCAAUUACGCCCCUCGCAGUUGGGGCGCUU--------------GCUCUCGACUGCUUCCUGGCCCUGGCCAAAAACCA------AAUCCAAUUCGAGACUGGCA ...((((((((((((((...((((((........)))))).))--------------))).....)))))))))(((....))).....(((------..((......))...))).. ( -35.50) >DroSec_CAF1 12839 98 - 1 CUUAGGGGGCAGGGCAAUUACGCCCCUCGCAGUUGGGGCACUU--------------GCUCUCGACUGCUUCCUGGCCCUGGCCAAAAACCA------AAUCCAAUUCGAGACUGGCA .....(((((.((((......))))...(((((((((((....--------------)).)))))))))......))))).((((.......------...............)))). ( -37.25) >DroSim_CAF1 13125 98 - 1 CUUAGGGGGCAGGGCAAUUACGCCCCUCGCAGUUGGGGCACUU--------------GCUCUCGACUGCUUCCUGGCCCUGGCCAAAAACCA------AAUCCAAUUCGAGACUGGCA .....(((((.((((......))))...(((((((((((....--------------)).)))))))))......))))).((((.......------...............)))). ( -37.25) >DroEre_CAF1 13143 114 - 1 CUUAGGGGGUGGGGCAAUUACGCCCCUCGCAGUUGGGGCACUUUCCAU----ACAGCGCUCUCGACUGCUUCCUGGCCCUGGCCAGAAACCAAAACCGAAUCCAAUUCGAGACUGGCA ..(((((.(.(((((......))))).)(((((((((((.((......----..)).)).))))))))).......)))))(((((..........(((((...)))))...))))). ( -43.42) >DroYak_CAF1 12932 112 - 1 CUUAGGGGGUGGGGCAAUUACGCCCCUCGCAGUUGGGGCACUUUCCAUACAUACAGUGCUCUCGACUGCUUCCUGGCCCUGGCCAAAAUCCA------AAUCCAAUUCGAGACUGGCA ..(((((.(.(((((......))))).)((((((((((((((............))))).))))))))).......)))))((((...((.(------(......)).))...)))). ( -44.10) >DroAna_CAF1 8480 87 - 1 -------------GAGGCCAGGCCCCGUGCAGAUGGGGCACUUUCUAC-----------ACUUCUCCGCUUCCUGUCGCAGCCCAUGGACCA-------GCCCGAUUCGGGGCUGGAA -------------(.(((...(((((((....))))))).........-----------........((........)).)))).....(((-------((((......))))))).. ( -33.70) >consensus CUUAGGGGGUAGGGCAAUUACGCCCCUCGCAGUUGGGGCACUU______________GCUCUCGACUGCUUCCUGGCCCUGGCCAAAAACCA______AAUCCAAUUCGAGACUGGCA .....(((((.((((......))))...(((((((((((..................)).)))))))))......))))).((((............................)))). (-23.98 = -25.56 + 1.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:55 2006