Locus 6524

Sequence ID 2R_DroMel_CAF1
Location 20,390,350 – 20,390,442
Length 92
Max. P 0.514818
window10383

overview

Window 3

Location 20,390,350 – 20,390,442
Length 92
Sequences 6
Columns 97
Reading direction reverse
Mean pairwise identity 84.48
Mean single sequence MFE -38.47
Consensus MFE -28.83
Energy contribution -30.22
Covariance contribution 1.39
Combinations/Pair 1.10
Mean z-score -1.74
Structure conservation index 0.75
SVM decision value -0.04
SVM RNA-class probability 0.514818
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20390350 92 - 20766785
GGUGUCUAUCGGCGGCUGUAGCUGGACCUUCUAGUGGCAUUUCCGCGUCGCCUGCAGAC-----CUGCUGCAAGUCAAGCGUGGCAAGUGCCGCUCU
(((.....(((((.......))))))))....((((((((((((((((.((.(((((..-----...))))).))...)))))).)))))))))).. ( -37.30)
>DroSec_CAF1 5858 92 - 1
GUUGGCUAUCGGCGGCUGUAGUUGGGCCUCCUAGUGGCAUUUCCGCGUCGCCUGCAGAC-----CUGCUGCAAGUCAAGCGUGGCAAGUGCCGCUCU
..........((.((((.......)))).)).((((((((((((((((.((.(((((..-----...))))).))...)))))).)))))))))).. ( -38.90)
>DroSim_CAF1 5741 92 - 1
GUUGGCUAUCGGCGGCUGUAGUUGGGCCUCCUAGUGGCAUUUCCGCGUCGCCUGCAGAC-----CUGCUGCAAGUCAAGCGUGGCAAGUGCCGCUCU
..........((.((((.......)))).)).((((((((((((((((.((.(((((..-----...))))).))...)))))).)))))))))).. ( -38.90)
>DroEre_CAF1 5504 92 - 1
GGUGGCUAUCGGCGGCUGUAGCUGGGCCUCCUAGUGGCAUUUCCGCGUCGCCUGCAGAC-----CUGCUGCAAGUCAAGCGUGGCAAGUGCCGCUCU
((.((((..((((.......)))))))).)).((((((((((((((((.((.(((((..-----...))))).))...)))))).)))))))))).. ( -44.40)
>DroYak_CAF1 5529 92 - 1
GGUGGCUAUCGGCGGCUGUAGCUGGGUCUCCUAGUGGCAUUUCCGCGUCGCCUGCAGAC-----CUGCUGCAAGUCAAGCGUGGCAAGUGCCGCUCU
((.((((..((((.......)))))))).)).((((((((((((((((.((.(((((..-----...))))).))...)))))).)))))))))).. ( -41.70)
>DroAna_CAF1 5488 82 - 1
--UGCCUGCCUGCGCCUUU-------CCUUCCACUGGCAUUUCCGCGUGGAGAGCAGGCUGCCGCUUCACCAAUUCAAGCGUGGCAAGUGC------
--((((.(((((((((...-------.........))).(((((....)))))))))))...(((((.........))))).)))).....------ ( -29.60)
>consensus
GGUGGCUAUCGGCGGCUGUAGCUGGGCCUCCUAGUGGCAUUUCCGCGUCGCCUGCAGAC_____CUGCUGCAAGUCAAGCGUGGCAAGUGCCGCUCU
..........((.((((.......)))).)).((((((((((((((((.((.(((((..........))))).))...)))))).)))))))))).. (-28.83 = -30.22 +   1.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:50 2006