| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 20,385,834 – 20,385,951 |
| Length | 117 |
| Max. P | 0.898343 |
| Location | 20,385,834 – 20,385,951 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 79.89 |
| Mean single sequence MFE | -45.57 |
| Consensus MFE | -26.89 |
| Energy contribution | -30.01 |
| Covariance contribution | 3.12 |
| Combinations/Pair | 1.36 |
| Mean z-score | -2.39 |
| Structure conservation index | 0.59 |
| SVM decision value | 1.00 |
| SVM RNA-class probability | 0.898343 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 20385834 117 - 20766785 GUACCUGGAGCUCCUGCUGCCGCUGGCGGUACCGCUCCUGCUCCAAGAGCUGCCGCUGACGAUCCAUCUUCAGGUUGAUUUCGUGCAGCUGUUGGUCGAACUGCUGCUGCAGCCGAC ......(((((...(((((((...)))))))..)))))....((((.((((((((..(.(((((........))))).)..)).)))))).))))(((..((((....)))).))). ( -45.30) >DroPse_CAF1 1213 117 - 1 CCACCUGCAGCUCCUGCUGUCGCUGGCGGUAGCGCUCCAUCUCGAGCAGCUGCCGCUGGCGUUCCAGCUUCAUGUUUAUCUCGUGCAGCUGCUGGUCAAAUUGAUGCUGAAGCCGGC ..(((.((((((...((((.(((..((((((((((((......)))).))))))))..)))...))))..((((.......)))).)))))).))).........((((....)))) ( -54.10) >DroGri_CAF1 1123 117 - 1 UCACUCGCAUCUCCUGCUGCCGCUGGCGAUAUCGUUCCUGCUCCAGCAGCUGUCGCUGCCGCAUCAUCUUUAGUUUGAUCAGCUCCAGCUGCCGUUCAAACUGCUGCUGCAGCCGGC ........(((.((.((....)).)).)))......((.(((.(((((((((..((....))..)).....(((((((.((((....))))....)))))))))))))).))).)). ( -38.60) >DroWil_CAF1 1342 117 - 1 CCACCUGCAACUCCUGCUGACGCUGGCGAUAGCGUUCCCGCUCCAACAGUUGCCUCUGACGAUCCAUUUUCAUAUUGAUCUCAUGCAAUUGCUGAUCAAAUUGCUGCUGGAGCCGUC ......((((((...((.(((((((....)))))))...))......))))))....((((.((((.(..((..((((((....((....)).))))))..))..).))))..)))) ( -31.90) >DroYak_CAF1 1075 117 - 1 GUACCUGGAGCUCCUGCUGCCGCUGACGGUAGCGCUCUUCCUCCAGCAGUUGCCGCUGACGAUCCAUCUUCAUGUUGAUCUCGUGCAGCUGCUGGUCGAACUGCUGCUGCAGACGAC ....(((.(((....(((((((....)))))))((..(((..(((((((((((.((.((.(((((((....)))..)))))))))))))))))))..)))..)).))).)))..... ( -51.90) >DroAna_CAF1 1216 117 - 1 GCACCUGCAGUUGCUGCUGCCGCUGGCGGUAGCGCUCCCGCUCCAGCAGCUGCCGCUGGCGAUCCAUCUUUAGGUUAAUCUCAUGCAGCUGGUGGUCGAACUGCUGCUGCAGUCUCC ..(((((((((....)))))(((..(((((((((((........))).))))))))..)))..........))))........((((((.((..(.....)..))))))))...... ( -51.60) >consensus GCACCUGCAGCUCCUGCUGCCGCUGGCGGUAGCGCUCCUGCUCCAGCAGCUGCCGCUGACGAUCCAUCUUCAGGUUGAUCUCGUGCAGCUGCUGGUCAAACUGCUGCUGCAGCCGAC ....(((((((....(((((((....)))))))((.......(((((((((((...(((.((((.((......)).))))))).))))))))))).......)).)))))))..... (-26.89 = -30.01 + 3.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:49 2006